| New model in OGS2.0 | DPOGS214117 |
|---|---|
| Genomic Position | scaffold805:+ 26065-27831 |
| See gene structure | |
| CDS Length | 1767 |
| Paired RNAseq reads | 440 |
| Single RNAseq reads | 1098 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001335 (0.0) |
| Best Drosophila hit | CG10463 (2e-160) |
| Best Human hit | tRNA-dihydrouridine synthase 3-like isoform 1 (1e-155) |
| Best NR hit (blastp) | PREDICTED: similar to dihydrouridine synthase 3-like [Apis mellifera] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC014592 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0003676 nucleic acid binding GO:0017150 tRNA dihydrouridine synthase activity GO:0050660 FAD binding GO:0055114 oxidation reduction GO:0008270 zinc ion binding GO:0008033 tRNA processing |
| InterPro families | IPR013785 Aldolase-type TIM barrel IPR001269 tRNA-dihydrouridine synthase IPR018517 tRNA-dihydrouridine synthase, conserved site IPR000571 Zinc finger, CCCH-type |
| Orthology group | MCL13273 |
Nucleotide sequence:
ATGACTAGTGTTAACTCCGGTGTTTGTGACATTAAAAAAGAGTACGTTCTCAAGAAGGAA
GAAAAAATTGTTAATGACGATGGTGTAAATAAACGAAAAATAAGTGAAAGTGATGAGTTT
GAAGCTAAGAAAACTAAAACTGATAATAATAAAGAAGAAGCGAGTAGATGTAAAAGAAAA
GGGCAAAATAAAGCCAGACCGAAAACTTTTCAAGATGATAAACAAAATAAACCATGTCCT
AGCATAGTCAATTTAATATCCAAAGATGAGCTAAAGCCATGTCAGTTTAATAATTGTAAA
TATATTCATAATCCTCTAGACTACATCAAATCAAAATTACCTGATTTGGGAAATGATTGT
CATTTATACAATACCAGAGGTAGATGTCCAAGAGGCATATCTTGTCGCTATGGTTCCTCT
CATATTACAGATGAGGGTTTTAATATGGTTGATGAAGAAAAGGCCTCAAAATGGAAAGAA
GATACCAAAAATACATTACAACACAGCATACAAATTCTCTTACAAAAACGAAAATATGAC
TTCTCTCTTTCAGAAAATCTAGTCAAATCTTTGGACATTAGAAAAAAAAAACAAATAAAC
AATCCCTCTAATGATTCCATAAATTCAGAGGAATTAAATGAAGACAATCACAAAATTGGA
CCAGTTCTTGATGAAGATATAGTGAAATTATTACCTAGAGAAAGAAAAAAAATTAACTGG
ACAGATAAATTATATCTAAGTCCCTTAACAACAGTTGGTAATCTACCATTTCGAAGAATT
TGCAAGGAATATGGAGCAGATATCACATGTGGCGAAATGGCATTGTGTGAATCACTCCTG
AAAGGCATGAAACAGGAATGGGCTTTAGTAAAGCGACATGAGTCTGAGGATTTATTTGGA
GCCCAAATATGTGGAAATAATGCTTATGCAATTGGAAAAGTTTCACAGTTACTAAAGGAA
AACACTGAACTTGATTTCATTGATCTAAATTTAGGTTGCCCAATAGATTTGGTGTATAAA
AAAGGAGGTGGAAGTGGAATGATGCATAGAATTCCAGCCTTAGAATTATCAGTTAAAAGT
GCCTCACAAATACTTGATATTCCATTTACTATAAAAATGAGAACTGGGGTATACCAGGAT
AAAAAAATTGCTCACACAATTATTCCTAAAGTAGTAGATTGGGGTGCTTCTCTTATAACA
CTGCATGGTCGATCGAGAGAAGCTAGATATACCAGATTAGCTGATTGGGAATATATAGAA
GTATGTGCAAAAGCTGCCTCGCCATGCCCAGTTTATGGAAATGGAGATATTCTTAGTTAT
GAAGATTATGTCAACAGTAGAAAAACAGCTCCAAATATCCAAGGAGTCATGATAGGTAGG
GGTGCCCTTATAAAACCATGGATATTCAATGAAATAAAAGAACAAAAGCTTTATGACATA
AGTAGTCATGAGAGATTTGAAATTATCAAAAAATTTACAAAATTTGGTTTGGAGCACTGG
GGCTCTGATACGCAAGGTGTTGAAAATACACGTAGATTTCTTTTAGAATGGCTATCATTT
TTATACAGATATATACCAGTTGGATTACTTGAAAGACCACCGCAAAAAATTAATGAACGA
CCTCCTTTGTACTTTGGCCGTAATGACTTAGAAACTTTAATGGCCTCTGGAAATTGTGCT
GACTGGGTAAAAATAAGTGAAATGGTACTTGGTCCAGTACCTGATGGATTTAAATTTCTA
CCTAAACATAAAGCTAATTCCTATTAA
Protein sequence:
MTSVNSGVCDIKKEYVLKKEEKIVNDDGVNKRKISESDEFEAKKTKTDNNKEEASRCKRK
GQNKARPKTFQDDKQNKPCPSIVNLISKDELKPCQFNNCKYIHNPLDYIKSKLPDLGNDC
HLYNTRGRCPRGISCRYGSSHITDEGFNMVDEEKASKWKEDTKNTLQHSIQILLQKRKYD
FSLSENLVKSLDIRKKKQINNPSNDSINSEELNEDNHKIGPVLDEDIVKLLPRERKKINW
TDKLYLSPLTTVGNLPFRRICKEYGADITCGEMALCESLLKGMKQEWALVKRHESEDLFG
AQICGNNAYAIGKVSQLLKENTELDFIDLNLGCPIDLVYKKGGGSGMMHRIPALELSVKS
ASQILDIPFTIKMRTGVYQDKKIAHTIIPKVVDWGASLITLHGRSREARYTRLADWEYIE
VCAKAASPCPVYGNGDILSYEDYVNSRKTAPNIQGVMIGRGALIKPWIFNEIKEQKLYDI
SSHERFEIIKKFTKFGLEHWGSDTQGVENTRRFLLEWLSFLYRYIPVGLLERPPQKINER
PPLYFGRNDLETLMASGNCADWVKISEMVLGPVPDGFKFLPKHKANSY