| Genomic Position | scaffold4676:+ 2014-3839 |
|---|---|
| See gene structure | |
| CDS Length | 1755 |
| Paired RNAseq reads | 8 |
| Single RNAseq reads | 26 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001303 (2e-53) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | PREDICTED: similar to orf [Tribolium castaneum] (2e-31) |
| Best NR hit (blastx) | retroelement polyprotein [Glyptapanteles flavicoxis] (2e-34) |
| GeneOntology terms | GO:0004519 endonuclease activity GO:0003676 nucleic acid binding GO:0003677 DNA binding GO:0003723 RNA binding GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0008270 zinc ion binding GO:0015074 DNA integration |
| InterPro families | IPR021109 Peptidase aspartic IPR018061 Peptidase A2A, retrovirus RVP subgroup |
| Orthology group | MCL21372 |
Nucleotide sequence:
ATGATATGGCGAACCGCGACGTTCTTTGAAAATATAAAGGGAGCTGGATATCCGTTATCG
AAAACGTTACTACCCGGTTCTACAACCGCATTAAATCAACCCGTGCTTGAGACCGTAACC
ATATCCGAAGAATCCAACAACAATACAAACTGTCGTGAAGTACAAGTGGTAACAGAATCA
GCACGTATACTGGCAGAAGCCATTAGATCTGTAAACCCAGATAGAGCACAAAAATATTTT
GTATCCAATTTTGACCCAACCATTCATGATGTAGATGTGTGGTGCGAAGAGGTTGAACGG
GCTAAATCTTTTAATAATTGGAATGATTCAGAGTGTTTATCGCGTGTACCACTGTGCCTC
AAAGGTGACGCCCGTTCTTGGCTAAACGAATGGGTAACCAGTGACCGAACATGGAGCAAT
TTTGTTATAGAATTTAAACCTCTGTGTCAACGAAAACTTGACTACGCAAATATTTTATAC
AAGGTGTTGCATACCACATCGGATAAATACAGATCCTTTGCCGAATATGCAAGAAGAATA
TTGTTGCGTCTTAAAATTGTTAAAGGGTTAAGTGATGAGTTAAGAGATCTGATTATTATC
TGCGGTATTACGGATCCTCATGTAAGAGCTGCAGCTACTTATGCTTATTTAGAAATTCAT
GACTTAGTTTCGTTCTTATCTATTTATGTGAAACCTACCCGTACTAAACATGAAAATCGA
GGCAGTACTAGGACGATACCTCCGGTTTGTGCATCAAGTATAAAATTTTTTGTTGGCCGA
CAATTTGGACATAAATCTAAATTCTGTCCCAAAAAATTCAGATCTGATCAAAATTCTAAC
ACGTTTGTCTCTGCTAACAATTCTAATAAGATAATTTGTAATTTTTGTAAAAAACCAGGA
CACGGTGAAGCTACTTGTTTTGCCGAGGAAAGATCGGGAGATCGTAACACAAAAAATATT
AATTTATGTAAAGCACAAATAATTGGTGCTCAACATAACAATGATCTTACAACTGCTGTG
ATACAGGGCATCCCTGTAGACGTATTAATTGACAGTGGGGCTCTGAACATTTCATTAGTT
TCTTCCGAAGCCCTGAAGTATTTTATATGTGAACGGAAACCTAAACATTTTATTTTGAAA
GGAATTAGTAACGTTGTCATACATACTGAATTTTTTGTTACCTTAACTGTTGAATTTGAC
AATATTTCTATAGAAGCTGATTTCGTGGTAGTACCAGGGTCTTGTATGACCACGTCTGTA
ATAATAGGAACCGACATTCTGAACCGCGATGGTATCACATACGTGCGAACCAAAGATAAA
CAGTACTTAACTCGAGCCGTGGAAAGAGACCTCCACTTGGTATCCACACATGAACTCATC
CAGATAAATACTCCCCTTAAGGGAAGAGAACTTGAAAATGTCACTAATTTAATAAAACGT
TTTTCGAGTTATTTCATCTCGGATACTGCATCGACTACAGTAACCACTGGCAAGATGTCT
ATTAAACTAACGGACAATACACCAGTTGCTTATAGACCTTACAGACTATCACATTCAGAA
AAGCTTAAAGTTCGAGAAATTATACGCGATTTAAAAGAAAAGGGTATCATTCGCGAATCT
AACTCTGAGTATGCGAGCCCTATAATATTAGTAAAAAAGAAAGACGGAAGCGATAGGATG
TGCGTCGATTATAGAGCTCTAAATCGTAGGACTGTAGAGACAGATACCCTCTACTACTTA
TTGACGACCACATAG
Protein sequence:
MIWRTATFFENIKGAGYPLSKTLLPGSTTALNQPVLETVTISEESNNNTNCREVQVVTES
ARILAEAIRSVNPDRAQKYFVSNFDPTIHDVDVWCEEVERAKSFNNWNDSECLSRVPLCL
KGDARSWLNEWVTSDRTWSNFVIEFKPLCQRKLDYANILYKVLHTTSDKYRSFAEYARRI
LLRLKIVKGLSDELRDLIIICGITDPHVRAAATYAYLEIHDLVSFLSIYVKPTRTKHENR
GSTRTIPPVCASSIKFFVGRQFGHKSKFCPKKFRSDQNSNTFVSANNSNKIICNFCKKPG
HGEATCFAEERSGDRNTKNINLCKAQIIGAQHNNDLTTAVIQGIPVDVLIDSGALNISLV
SSEALKYFICERKPKHFILKGISNVVIHTEFFVTLTVEFDNISIEADFVVVPGSCMTTSV
IIGTDILNRDGITYVRTKDKQYLTRAVERDLHLVSTHELIQINTPLKGRELENVTNLIKR
FSSYFISDTASTTVTTGKMSIKLTDNTPVAYRPYRLSHSEKLKVREIIRDLKEKGIIRES
NSEYASPIILVKKKDGSDRMCVDYRALNRRTVETDTLYYLLTTT