| Genomic Position | scaffold1223:- 17326-19834 |
|---|---|
| See gene structure | |
| CDS Length | 1473 |
| Paired RNAseq reads | 672 |
| Single RNAseq reads | 1665 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007995 (8e-08) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (5e-159) |
| Best NR hit (blastx) | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (1e-147) |
| GeneOntology terms | GO:0006278 RNA-dependent DNA replication GO:0003723 RNA binding GO:0003964 RNA-directed DNA polymerase activity |
| InterPro families | IPR000477 Reverse transcriptase |
| Orthology group | MCL10012 |
Nucleotide sequence:
ATGTACCGCGATTCCGTTTCAATGGTTAGGACTGCTGTTGGCGATACAAAACCCTTTCCG
ATCTCAGTAGGGGTTCACCAAGGCTCGGCTCTTAGCCCCTTCTTGTTCAATGTAGTGCTG
GACACTGTCTCGGCTAACATCCAGGACCAGCCTCCATGGCTGATGATGTATGCCGATGAC
ATAGCGCTCATTGATGAGAGCAGGTTGACGCTAGAGCGAAGAGTGAACCTCTGGAAGGGT
ACGCTTGAGAACGGTGGTCTTAAACTAAATGTGACGAAGACCGAGTACATGGCTTGCGGA
AGCCCGGACTCTTGCACTATCCATATAGGTCCTGAACCAGCCGTTAAGTCGGAAAAGTTC
AGGTACCTTGGATCTATTCTGCATGAGTCCGGAGGCATCGATCACGATGTCCAAGCCCGG
ATCAGCGCTGCTTGGGCGAAATGGCGTGAGGTCACAGGTGTGGTCTGCGATCGCAGAATA
CCTACCAAGCTCAAGGGAATAATATACAAGAGCATAATCCGACCGGTTCTCTTATATGGA
AGCGAATGTTGGCCAACACTGTCCAGGCACACTCAGGAGCTTCACGTCACGGAGATGAAG
ATGCTGAGGTGGATGTGTGGCGTAACGCGGGCTGACCGTATACGTAACACATTTATCCGA
GGTAGTCTTGGAGTCCGTGACGTAGCGGATAAGCTTCAAGAGAGTCGCCTGAGATGGTAT
GGCCACGTTGCACGCCGGCCTGAGAATTACGTCGGAAAAATTTGCCTTGATATGTCGGTC
CCTGGAGCAAGACCCCCAGGACGCCCAAGAAAGCGATGGCTGGACACCGTGAAGCAGGAT
ATGAGAGCCAATGGACTTACCACCGCAGATGCTAAAGACCGTGCAAAGTGGAGGAGTTTG
AGCAGGAAGGGTTGGGGTTGGATAATATTGGAGAACTGTCAACCCAGAGAGTGTCCTACT
AAGTATTTTCCGATATTTGGTCTTGGGCATGCGGGTACGCGACCCCGGATCCTCGAACCA
CCACTTTCATACCTTTATCTCCAGTCCATGAAGGTGATGTCCTGTACTTCCCTCCCATTC
TCCTTCCTAATCTCTTTCCTCCCTTCTCTATCTTTCCCTTCCCTGGTTTTACCTATAAAT
TGGGGTTTTGGAGGACAAACGGCAGTCGTCCCGTTAAAACCAATTCTCGCCACTCATATG
ACTGACAAAGCTGAGCGATGTCTGGACACCGTGAAGCAGGATATGAGAGCCAATAGACTT
ACCACCGAAGATGCAAAAGACCGTTCAAAGTGGAGGAATTTGAGAACGAAGGCAGCCCCG
CCTAAAGCTGGGATAATTGCCAAGAAGAAGAATAGAAGAAGAATATTAGTGAACTGTGAG
AGTGAAAGTAGTAGCTGTGGTCAAGTAACTTCAGCTCGAGCATGGGCTGGTTTGACCGGG
GAAGTACCACTCTCTCACAGAAGATCGGCTTAA
Protein sequence:
MYRDSVSMVRTAVGDTKPFPISVGVHQGSALSPFLFNVVLDTVSANIQDQPPWLMMYADD
IALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMACGSPDSCTIHIGPEPAVKSEKF
RYLGSILHESGGIDHDVQARISAAWAKWREVTGVVCDRRIPTKLKGIIYKSIIRPVLLYG
SECWPTLSRHTQELHVTEMKMLRWMCGVTRADRIRNTFIRGSLGVRDVADKLQESRLRWY
GHVARRPENYVGKICLDMSVPGARPPGRPRKRWLDTVKQDMRANGLTTADAKDRAKWRSL
SRKGWGWIILENCQPRECPTKYFPIFGLGHAGTRPRILEPPLSYLYLQSMKVMSCTSLPF
SFLISFLPSLSFPSLVLPINWGFGGQTAVVPLKPILATHMTDKAERCLDTVKQDMRANRL
TTEDAKDRSKWRNLRTKAAPPKAGIIAKKKNRRRILVNCESESSSCGQVTSARAWAGLTG
EVPLSHRRSA