| New model in OGS2.0 | DPOGS204026 |
|---|---|
| Genomic Position | scaffold452:- 59845-68117 |
| See gene structure | |
| CDS Length | 3027 |
| Paired RNAseq reads | 2311 |
| Single RNAseq reads | 5264 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004879 (0.0) |
| Best Drosophila hit | lodestar (1e-94) |
| Best Human hit | transcription termination factor 2 (3e-49) |
| Best NR hit (blastp) | GK12953 [Drosophila willistoni] (2e-134) |
| Best NR hit (blastx) | GH17632 [Drosophila grimshawi] (6e-116) |
| GeneOntology terms | GO:0006353 transcription termination GO:0008094 DNA-dependent ATPase activity GO:0003717 RNA polymerase II transcription termination factor activity GO:0006369 termination of RNA polymerase II transcription GO:0005634 nucleus GO:0004386 helicase activity GO:0003677 DNA binding GO:0005524 ATP binding |
| InterPro families | IPR014001 DEAD-like helicase IPR000330 SNF2-related |
| Orthology group | MCL11731 |
Nucleotide sequence:
ATGGAGAATTCATATGTTGAATACCGTGATACAACTGGTGTCGAAAGTGATTCGGATACT
GAAATTATTGACAATAGTTATACAGACGAATCTTTCGCTAAATTAAAAACCCCTGGAAAA
AAGAACCATACAGCATTTGTGCCTGAATCGGATGACACAGTATCAGAAGACGATGATGTT
TCAAAAATCAATCTATCTAAGTCAGTGCAAAGCAGAAGCAGTGTTAATCGTCATGTTGTT
CTAAGTAGTGACGATGAAAAAAGTAAAAGGGGCAGTATACAAAAACAGTCTGATGCTTCA
AATAACATTGTTCTAAGTTCTTCAGAAGATGAGGCTGAAGATTCACCTGAAATAAAACCG
AGACGGCGTCCCAAAACCTCTCCTCGGCTGTCAGAGTCGTTTATTGGACGTAAAACAAAA
AAACGTATATTTCTCATAGACTCGGACACTGAAAACTCTATAATAGTTGAACATGACAAT
AACCGGAAACTGAAATGTGTTAAGGACACTCCGGCTAAGATCGATAAGAACGATTTACGA
AAAAGTATACTGGATATAAAGAATATGAGTATACAAAGTAATGATAGTGTACGGACTGAT
GATGGCGACGGAACTGATGATGAACAGATAAGTGGTGATGAAAAGACTGAGGGAAGAGAT
GGAACTGATCAGGACGAGGGAAGCCACAGTGATAGTGTTCACAGCAATGATGATCAGAAC
ATTGAACATAGTAGACAGAGAGTTAGTGACAGCGGACACTCTGATGACAACACTGATCTT
CAGGACACTGAAACGAGACGTGATATATCATCAAGAGGTGATGATTTAGATGAAAGTGAT
GGAAATGACAAAAACGAAGGTTACTCCAGTGACGACGGTCCTGATGAAGATCAGCTAGTG
ATGTCCAGAGCTACGAGGATGAGTATAATGGGTATACTGCCGAAGGAGAACGATAGTGAT
GACTCAGATTACCTGCAGTCTGATGATACCAACCAGACATCACGAGGTAGTTCTTTGGAC
CTCCCGACTGACCCACCAGCCGGCAATGAAACACCCAAGAAAGATGGAGACACATCAAGA
TTGACGTGCTCACCTTTTCAGAGTCCACTCCATGATATCACGAATGAAGTCAACTCACCA
AATAATTCCAAGAACACTCCGGATATCTGTGATCTGACCAGATCTGAGCCTTGTGATCTA
CGGAACAGGGTTTTAGATAAGTTGAACAGTACCCAGACCAAATATGTGGAGAAGGTTATT
GACGATGACGTCACCATCATAGATGCGAAACCAGAGGTCATAGCCCTCAGCAGCGATGAA
GATGAGGTGAGAGATGAGAAGAAATCCCCCAATACAAAGGGTAACCTGAAAGCGGAGCCG
ACATCGGTTAGGAAGGACAACACCATCAAGCAGTACCTCCTGCCGCCCAGTTATCCCAAC
CAGGTGGTGTACGTCAAGAAGAATGTTCGTGAAAACGAACTCTCCAAGCTCAACGGACTC
AAAGAAGACTTGCAGAATATCAGATATCTCCTGGAGAATATGGATATGAACTCGCTACCT
GACGGAGGGCTCAAGCTGATAGAACGACTCACGACCCTGGAGGCGGAAGTCAGGAAACAG
GGGGACAAAGTGGCCAACATGGTGATAGAGCCAGATGAACCTACTCGCGCGGATGTAGCG
AGGGATGGCTTCGACAAAGAGAACAAGGGTCTGTCCTGGGACGACATACAGAAGGCGAGT
AATGCGGTCCAGCCCAGGATGTTCGGCAAACAGGCGATGGCCACCCACATGGCGGAACGT
AACCTGATCCTGGAGCGTCTCCGCGACCTGTACGAGTCCTTGGCTTCCCGTCCGTCGGAA
CAGCACCACCACCACCAGCCGGCGCCGCTCGTCACCTCTCTCATGGACCACCAGCTACAC
GCCCTCGCCTGGCTGCACTGGAGGGAGACGCAGAAACCACGGGGAGGGATACTGGCTGAC
GACATGGGCCTGGGCAAGACGATCACCATGATAGCTCTGGTAGTGAGCGACAAGGAGAAG
AACATCGACCACCAGCCAGACGATGACGATCATGGAGGGAGGTCCAGATTGGCTCGCGGC
GGCACGCTGGTGGTGTGTCCGGCGTCGCTGATGCAGCAGTGGGCGGGCGAGGTGGCGAAG
CACTGCCGGCCGCACGCCGTGTCCGTGTGTCACCACCACGGAGCCGCCCGCGCCACGCAG
CCCCACCGCCTCGCCAGCTACGACCTCGTCATCACCACCTACAACATCCTGCAGAGGGAG
AGCGAGAAGGGCGGGGTGTTGACCCGCGTCCGCTGGCGCCGCGTCATCCTGGACGAGGCG
CACGTGGTCCGTAACCACAAGTCGTCGACGTCGCTGGGCGTGTGCAGCCTGTCCTCCTGG
GCTCGCTGGGCGTTGACCGGGACCCCGCTACATAACAAGGACCTGGACCTGTTCGCCTTG
CTGAAGTTCCTCAAATGTACACCCTTCGACGACCTCGCGATGTGGAAAAAGTGGATCGAT
AACAAATCTCTCGGCGGCCAAGAACGACTGAGCACCATCATGAGGTGCATCATGCTGAGG
AGGACCAAGCAGCTGCTGCAGGAGAGGGGCCAACTCACCTGTCTGCCGGAGCGGAGCGCG
CACCACGTGGACGTCACGCTGCACAAGGACGAGATGAACGTGTACCAGAAGGTGTTAGTG
TTCTCCAAGACCCTGTTCGCTCAGTTCCTCCAGCAGCGCGCCGAGCGTATCGGGGACTCC
GCCCCCGGGAAGGACTCCGAGTACCATAAGATGCATAAGAAAATGATCGCTTTACAAGGA
GCGAAACCAGTGAAATCTCACGAGATCTTAGTCCTTTTGCTGCGTCTCCGTCAAGTGTGT
TGTCACTGTGGCCTGATAGCGGCCATGTTGGATCCAGACGACACGGCGGACGTGGTCGAG
GACCAGGGAGGAGCCGACCTCATGGAAGAACTCAACAAACTGTCGCTAGAGGACTCGCGC
TCTAAGAGAAAGGTTGCAGGGAATTAG
Protein sequence:
MENSYVEYRDTTGVESDSDTEIIDNSYTDESFAKLKTPGKKNHTAFVPESDDTVSEDDDV
SKINLSKSVQSRSSVNRHVVLSSDDEKSKRGSIQKQSDASNNIVLSSSEDEAEDSPEIKP
RRRPKTSPRLSESFIGRKTKKRIFLIDSDTENSIIVEHDNNRKLKCVKDTPAKIDKNDLR
KSILDIKNMSIQSNDSVRTDDGDGTDDEQISGDEKTEGRDGTDQDEGSHSDSVHSNDDQN
IEHSRQRVSDSGHSDDNTDLQDTETRRDISSRGDDLDESDGNDKNEGYSSDDGPDEDQLV
MSRATRMSIMGILPKENDSDDSDYLQSDDTNQTSRGSSLDLPTDPPAGNETPKKDGDTSR
LTCSPFQSPLHDITNEVNSPNNSKNTPDICDLTRSEPCDLRNRVLDKLNSTQTKYVEKVI
DDDVTIIDAKPEVIALSSDEDEVRDEKKSPNTKGNLKAEPTSVRKDNTIKQYLLPPSYPN
QVVYVKKNVRENELSKLNGLKEDLQNIRYLLENMDMNSLPDGGLKLIERLTTLEAEVRKQ
GDKVANMVIEPDEPTRADVARDGFDKENKGLSWDDIQKASNAVQPRMFGKQAMATHMAER
NLILERLRDLYESLASRPSEQHHHHQPAPLVTSLMDHQLHALAWLHWRETQKPRGGILAD
DMGLGKTITMIALVVSDKEKNIDHQPDDDDHGGRSRLARGGTLVVCPASLMQQWAGEVAK
HCRPHAVSVCHHHGAARATQPHRLASYDLVITTYNILQRESEKGGVLTRVRWRRVILDEA
HVVRNHKSSTSLGVCSLSSWARWALTGTPLHNKDLDLFALLKFLKCTPFDDLAMWKKWID
NKSLGGQERLSTIMRCIMLRRTKQLLQERGQLTCLPERSAHHVDVTLHKDEMNVYQKVLV
FSKTLFAQFLQQRAERIGDSAPGKDSEYHKMHKKMIALQGAKPVKSHEILVLLLRLRQVC
CHCGLIAAMLDPDDTADVVEDQGGADLMEELNKLSLEDSRSKRKVAGN