| New model in OGS2.0 | DPOGS204036 |
|---|---|
| Genomic Position | scaffold452:+ 68625-71615 |
| See gene structure | |
| CDS Length | 1263 |
| Paired RNAseq reads | 398 |
| Single RNAseq reads | 1018 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004784 (0.0) |
| Best Drosophila hit | crowded by cid (1e-148) |
| Best Human hit | polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform 1 (4e-147) |
| Best NR hit (blastp) | PREDICTED: similar to CG5970-PA [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG5970-PA [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0000214 tRNA-intron endonuclease complex GO:0005524 ATP binding GO:0016301 kinase activity GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation GO:0000166 nucleotide binding GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity GO:0051733 polydeoxyribonucleotide kinase activity GO:0016740 transferase activity GO:0030423 targeting of mRNA for destruction involved in RNA interference GO:0006397 mRNA processing GO:0035087 siRNA loading onto RISC involved in RNA interference GO:0005634 nucleus GO:0046404 ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity |
| InterPro families | IPR010655 Pre-mRNA cleavage complex II Clp1 |
| Orthology group | MCL14847 |
Nucleotide sequence:
ATGACTGAAGTGCAATTACAAGAGATTAAATTAGATCCCGATTCTGAACTTCGTTTTGAA
GTTGAAACGAAAAATGAAAAAGTCGTTTTAGAGGTTAAGAGCGGCTATGCCGAGTTATTC
GGCACAGAATTGGTCAAAGGCAAGCCCTATGAATTCCACACGGGAGCGAAAGTTGCTGTG
TTCACGTGGCATGGCTGTACAGTGGAATTGCGAGGACGTACAGAAGTTAGTTATGTCGCC
AAAGAAACTCCTATGGTTGTATACTTAAATGTACATGCAGCATTAGAACAGCAAAGGGTA
GCGGCTGAACACGAAAATACAAGAGGACCGGTGACTATGGTTGTGGGTCCCGGAGATGTT
GGTAAATCCACATTAACGAAGATACTCCTTAATTATGCGGTGCGGATGGGTCGACGACCT
ATATTTGTAGACCTGGATGTTGGCCAAGGACATATAAGTGTTCCAGGAACTATTGGTGCA
TTATTAGTTGAGCGTCCAGCCTCTATAGAAGAGGGTTTTAGTCAGCAAGCGCCGCTAGTG
TACCACTTTGGTCACAAATCACCCGGCGACAACTTGGAGCTATACAACATGATTGTGTCA
CGTCTGGCTGAAGTTATCGCTGAGAGATGTGAAAATAATAAGAAAGCATCAACGTCAGGA
GTGATCATCAATACATGTGGATGGGTGAAGGGAACAGGGTACAAAGTACTGACACATGCT
GCCCAGGCTTTTGAGGTCGATGTTATATTGGTGTTGGACAACGAGCGTCTCTACAATGAA
CTGAAGAGGGACATGCCGAAGTTTGTGAAAGTTGTTTATTTACCAAAAAGTGGAGGGGTA
GTTGAACGTTCCTCCACACAACGAGCTGAGGCCCGAGACGCTCGTATAAGGGAATACTTC
TATGGAAATCGGACACCATACTACCCACATTCATTTGATGTTAAGTTCTCAGACCTTAAG
ATCTACAAGGTGGGCGCCCCCTCTCTGCCAGACTCTTGTATGCCTCTGGGTATGCGTTCG
TCTGATGCTCTGACCCGCCTGGTGCCGGCCTGGCCGTCTCCGTCTCTGGCGCACCGGGTT
CTGGCCGTGTCCTTCGCCCCATCACCAGACGACCACGTGCTCGCGACCAACCTGGCTGGA
TTCGTTTGTGTTACTGCGGTGGACATGGATCGTCAGACGATGACCATCCTATCTCCTCAG
CCTCGCCCGCTGCCAGATACTATACTGCTTCTCTCAGACTTGCAGTACATGGACAACCAC
TAG
Protein sequence:
MTEVQLQEIKLDPDSELRFEVETKNEKVVLEVKSGYAELFGTELVKGKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYVAKETPMVVYLNVHAALEQQRVAAEHENTRGPVTMVVGPGDV
GKSTLTKILLNYAVRMGRRPIFVDLDVGQGHISVPGTIGALLVERPASIEEGFSQQAPLV
YHFGHKSPGDNLELYNMIVSRLAEVIAERCENNKKASTSGVIINTCGWVKGTGYKVLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSSTQRAEARDARIREYF
YGNRTPYYPHSFDVKFSDLKIYKVGAPSLPDSCMPLGMRSSDALTRLVPAWPSPSLAHRV
LAVSFAPSPDDHVLATNLAGFVCVTAVDMDRQTMTILSPQPRPLPDTILLLSDLQYMDNH