New model in OGS2.0 | DPOGS208884  |
---|---|
Genomic Position | scaffold1599:+ 6222-15125 |
See gene structure | |
CDS Length | 645 |
Paired RNAseq reads   | 12 |
Single RNAseq reads   | 102 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012416 (2e-89) |
Best Drosophila hit   | nicotinic acetylcholine receptor alpha 80B (7e-112) |
Best Human hit | neuronal acetylcholine receptor subunit alpha-4 precursor (9e-62) |
Best NR hit (blastp)   | nicotinic acetylcholine receptor subunit alpha 4 isoform 2 [Bombyx mori] (3e-117) |
Best NR hit (blastx)   | nicotinic acetylcholine receptor subunit alpha 4 isoform 2 [Bombyx mori] (2e-118) |
GeneOntology terms    | GO:0005892 nicotinic acetylcholine-gated receptor-channel complex GO:0004889 nicotinic acetylcholine-activated cation-selective channel activity GO:0045211 postsynaptic membrane GO:0006811 ion transport |
InterPro families    | IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR006201 Neurotransmitter-gated ion-channel IPR002394 Nicotinic acetylcholine receptor IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain |
Orthology group | ND |
Nucleotide sequence:
ATGACAACGAACCTATGGGTGGAGCAGTCGTGGTATGACTACAAGCTTCGCTGGGAGCCT
CGCGAGTACGGCGGAGTGCACATGCTGCATGTGCCCTCCGATCATATATGGAGACCAGAC
ATCGTGCTTTACAACAATGCCGACGGTAACTTCGAGGTAACGTTGGCGACCAAGGCGACC
ATCTATCACCAAGGGCTGGTCGAATGGAAACCACCCGCTATTTACAAGTCCTCCTGCGAA
ATAGACGTGGAATATTTTCCTTTCGACGAGCAAACATGCGTTCTTAAGTTCGGTAGCTGG
ACGTACGACGGATTCAAGGTGGACTTGAGGCATATGGATGAGCAAGCTGGGAGTAATGTG
GTGTCCATGGGAGTTGATCTATCAGAGTTCTATATGTCCGTGGAATGGGACATTTTAGAA
GTACCAGCTGTTAGGAACGAGAAGTTTTACACGTGTTGCGACGAGCCCTACTTGGATATA
ACGTTCAACATTACACTAAGACGCAAGACGCTGTTCTACACCGTCAATATTATCATACCT
TGTATGGGTATATCGTTCCTTACCATACTTACCTTTTACTTGCCTTCTGACAGCGGCGAA
AAGGTATTTATACTAAAACTTTACAATATTTATATAGCCTATTAG
Protein sequence:
MTTNLWVEQSWYDYKLRWEPREYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKAT
IYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQAGSNV
VSMGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITLRRKTLFYTVNIIIP
CMGISFLTILTFYLPSDSGEKVFILKLYNIYIAY