New model in OGS2.0 | DPOGS203046  |
---|---|
Genomic Position | scaffold558:- 16132-18043 |
See gene structure | |
CDS Length | 1347 |
Paired RNAseq reads   | 283 |
Single RNAseq reads   | 771 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006797 (3e-158) |
Best Drosophila hit   | CG3645, isoform B (1e-131) |
Best Human hit | tRNA-dihydrouridine synthase 1-like (3e-114) |
Best NR hit (blastp)   | PREDICTED: similar to CG3645-PA, isoform A isoform 2 [Apis mellifera] (8e-159) |
Best NR hit (blastx)   | PREDICTED: similar to CG3645-PA, isoform A isoform 2 [Apis mellifera] (9e-148) |
GeneOntology terms    | GO:0050660 FAD binding GO:0055114 oxidation reduction GO:0008033 tRNA processing GO:0017150 tRNA dihydrouridine synthase activity |
InterPro families    | IPR013785 Aldolase-type TIM barrel IPR001269 tRNA-dihydrouridine synthase IPR018517 tRNA-dihydrouridine synthase, conserved site |
Orthology group | MCL13321 |
Nucleotide sequence:
ATGGTAGATGCCAGTGAATTGGCATGGAGATTACTCAGTCGAAGACACGGTGCTACGCTT
TGTTATACCCCCATGTTACACAGTACCGTATTTATTAAAGACCCTAAATACAGAAAAGAG
AATTTTACAACATGTACTGAAGACAGACCATTATTTGTTCAGTTCTGTGGTAATAATCCA
GAAACAATGGCTGCCGCTGCTAAACTTGTAGAAAGTGATTGTGATGCTATAGACATTAAT
TTGGGTTGCCCACAATCTATTGCTAAAAGGGGAAGATATGGGTCCTTTCTTCAAGAGGAG
TGGCAGTTATTAAGAGACATAGTTTCTACTATGTCAAAAACAGTGTCTGTACCAATTACA
TGTAAAGTGAGAGTCTTTGAAAGCATTGAAAAATCTGTGCAATATGCGTTGATGCTACAA
GAGGCTGGGTGTAAGCTATTGACTGTTCATGGCAGAACTAGAGAACAAAAGGGACCTTTG
ACAGGTATTGCTAGTTGGGAGCATATTAAAGCCATTCGAGATGCAATTTCCATACCAATG
TTTGCAAATGGAAATATACAATGCTTACAAGATGTTGAACGATGTTTGCAATATACAAAA
GTTGATGGTGTAATGAGTGCAGAAGGTAATCTTACAAATCCAGCAATATTTGAAGGAATA
AACTCTGTATCATGGGAGATTGCTTTAGAATATCTTGACCTTGTGGAGACATACCCCTGC
CCAACATCATACATAAGAGGTCACCTATTCAAAATCTTTCATAAAGTATTCACTTTTGAT
AGCAATAATGAAGAAAGACAGTTGTTGGCTACAGCTCAATGCCTAGATGATTTTAAACAA
GTGTGCATTAAAATAAAAAATAAGTATTTGCCCTATCATGAGGGGAGATTGCAATTTGAT
GATAATGAAGGAATTACAAGAAATCAAAAAAGTTTAATTCTTCCACCATGGATCTGTCAA
CCATATGTGAGAATGTCTCCTGATGAACATACAAAGAAAATGGAGAGGATAGTAAATAGT
CAGGATAATAACAATGATTCTAAAAGAACTTTCGAAGACAATGATGGCAACAAAATATCA
AGAAAAAAAATGAAAAAAATGCGAAGGGTTATGAGGCGACCGGTCAAACCTGAGGAAGCA
TTGAAAAATAGTAGGAGTGGTGATATATGTGTTAATGACACATGCCCCAATCCCCTTGGA
GGGAAATGCGAATATCAGCTTTGCAAAAAATGTTGCAGAAATAAATGTTATGAGGAAAAT
AGAGATTGCAAAGGTCATAGAATATTGGTGAAAACAAGGAGAGAAATGGCTATTAGTTTT
GCACAAAACGCTGACAAAATTGCTTGA
Protein sequence:
MVDASELAWRLLSRRHGATLCYTPMLHSTVFIKDPKYRKENFTTCTEDRPLFVQFCGNNP
ETMAAAAKLVESDCDAIDINLGCPQSIAKRGRYGSFLQEEWQLLRDIVSTMSKTVSVPIT
CKVRVFESIEKSVQYALMLQEAGCKLLTVHGRTREQKGPLTGIASWEHIKAIRDAISIPM
FANGNIQCLQDVERCLQYTKVDGVMSAEGNLTNPAIFEGINSVSWEIALEYLDLVETYPC
PTSYIRGHLFKIFHKVFTFDSNNEERQLLATAQCLDDFKQVCIKIKNKYLPYHEGRLQFD
DNEGITRNQKSLILPPWICQPYVRMSPDEHTKKMERIVNSQDNNNDSKRTFEDNDGNKIS
RKKMKKMRRVMRRPVKPEEALKNSRSGDICVNDTCPNPLGGKCEYQLCKKCCRNKCYEEN
RDCKGHRILVKTRREMAISFAQNADKIA