| New model in OGS2.0 | DPOGS200847 |
|---|---|
| Genomic Position | scaffold447:+ 108288-114938 |
| See gene structure | |
| CDS Length | 2274 |
| Paired RNAseq reads | 3016 |
| Single RNAseq reads | 6551 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009903 (9e-102) |
| Best Drosophila hit | CG6418 (0.0) |
| Best Human hit | ATP-dependent RNA helicase DDX42 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to CG6418-PB [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG6418-PB [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0004386 helicase activity GO:0005524 ATP binding GO:0003676 nucleic acid binding |
| InterPro families | IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL14643 |
Nucleotide sequence:
ATGAGTTACAATTCGAGTGGGGGCAAGGGGTTCGGATTTTCCGGATTCACGATGCCAAAA
CGGAACCCTTCGAACGTTTCACTACACGCTGTTCCTCCGCCTCCTTCCCAAATGAATGCT
GTCCCTCCTCCGAATCCCGGGTTATCGAAGCAGGGTTATTCAACTATGAACGCGATAACA
CAGAACGCCATCGGTGGTACTTGGGGTACACTTGGGAAAAAGCGAGCTAAGACTGAAGAT
GAGTATTTTGATGAAGATGATGAGCCTCCGACTCCAGCTCTTGCTTATATACCAGCACCA
GGGAGCCCTACTAATGAAGCCAACAGCTCTAGGGCAAATGAAGAAGAGGAAGATCCCCTG
GACGCGTACATGGCCGGTCTGGAGAAACAGGCGGCTAAAGATATGAAGGTTAGCAAAGAG
AATGCCGTTAGTGGAAAAGGTGACGCCGGGAGAGGGACCAGAGGAGATATTGATGAGATG
GACGACGAAGAAAGTTACTATAAATACATGGAAGATAATCCACTCCAGACAGCCGATGAT
GGCTCCGACGTTGAAATAGAGTATGATGAGGATGGAAATCCTATCGCTCCTCCTAAGAAA
AAGTTTATAGATCCGCTGCCACCGATAGACCATTCGGAGATTCAGTATGAACCGTTCGAA
AAGAACTTCTATACACCACACGAAGATATAGAGAAACTAGAGCAGCATCAGGTGGAAGAG
CTGAAGAAAAACTTGGGGGTCAAGATTTCCGGACCTGATCCTCCGAAACCTGTGAGTAGT
TTCGGTCATTTGGGCTTCGATGAACAGCTGATGAAGGCTATTCGAAAGTCAGAGTACACT
CAGCCGACGCCGGTGCAGGCGGCTGGCATACCAGCGGCGCTCTCCGGAAGGGATCTCATA
GGTATTGCCCGCACTGGTTCTGGTAAAACGGCAGCATTCCTCTGGCCACTGCTCGTCCAC
ATCATGGATCAGAAAGAGTTGGCTCCGGGGGATGGGCCCATCGGACTCATACTGGCCCCC
ACTTCCCTCAACCGAGTTATATACATGGAGGCGAAGAAATTTGGCAAAGTATACAACATC
AGATGTGTTTGTTGTTATGGAGGGGGGTCCAAGTGGGAGCAGAGTAAGGCTTTGGAAGGG
GGCGCGGAGATAGTCGTTGGCACTCCGGGGCGGGTCATCGACCTGGTGAAATGCAAGGCG
ACCAATCTTCAGCGCGTCACGTACCTGGTGCTGGACGAGGCCGACCGGATGTTCGACATG
GGGTTTGAGCCTCAGGTCCGTTCCATCTGCAGTCACGTCCGTCCTGAGCGCCAGGCCCTG
CTGTTCTCCGCGACCTTCCCTCGTCGCGTGGAGCGCCTCGCCCGTGACGCTCTTCACGAC
CCCGTGCGAGTCCAACACGGAGCGGCCGGAGAAGCCTCCAAGCTGGTGAAACAACGTGTC
ACTATCTTCAATAAACCGGAAGAGAAGTGGCCCTGGCTGTTGGAGAATTTAGTCGACTTC
CTGTCGTCGGGGAGCGTGTTGATATTTGTTACGAAGAAGTTGGAAGCGGAACAGACAGCA
GCAAACCTCGGCGTGCAGCAGTATGACGCGCTGCTGCTGCACGGAGACCTGGAGCAGGCG
GACAGGAACAAGGTCATCACGGCCTTCAAGAGACAGGAGAGCAACATACTCGTCGCCACC
GACGTAGCTGCTCGCGGTTTGGACATCCCTCACATCCGCACGGTGGTGAACTACACCGTG
GCGCGCGACATCGACACACACACACACAGAGTGGGCCGCACGGGGAGGGCCGGCGTCCCG
GGGACGGCGCACACGCTGCTGTCCCGGGACAGGGACAAGGACTTCGCGGGACACCTGCTC
AGGAACCTTGAGGGAGTGCAGCAGGAGGTGCCGGAGGAGTTGATGCAGCTAGCGATGCAG
TCAACGTGGTTCCGGAAATCACGGTTCAAGAAGGGGAAGGGCAAGAATCTGAACATAGGC
GGCTGCGGACTCGGTTACAAAGAGCGTCCCGGGCTGCCCGCCTACAACGACGAGGTGTCT
CTCACAGCGAGCGTGGAGAAGACGGTAGAGAAGGCCGGGGGCCCCGCCACCGACCGCCTC
GCCTCGCTCAAACAAGCCTTCCGCTCACAATACAACCAGTTCACCGCGTCGTCTGACCAC
TCGTGGGAGCAGACGCGGCCCGTCCTCCAGCCGGGGGTGAACGCGCCGGCCAACGCGAAC
ACGGACAAAACCGAGAGACTGCGCAAGAGCGGCAAGAAGAGCCGCTGGGAATAG
Protein sequence:
MSYNSSGGKGFGFSGFTMPKRNPSNVSLHAVPPPPSQMNAVPPPNPGLSKQGYSTMNAIT
QNAIGGTWGTLGKKRAKTEDEYFDEDDEPPTPALAYIPAPGSPTNEANSSRANEEEEDPL
DAYMAGLEKQAAKDMKVSKENAVSGKGDAGRGTRGDIDEMDDEESYYKYMEDNPLQTADD
GSDVEIEYDEDGNPIAPPKKKFIDPLPPIDHSEIQYEPFEKNFYTPHEDIEKLEQHQVEE
LKKNLGVKISGPDPPKPVSSFGHLGFDEQLMKAIRKSEYTQPTPVQAAGIPAALSGRDLI
GIARTGSGKTAAFLWPLLVHIMDQKELAPGDGPIGLILAPTSLNRVIYMEAKKFGKVYNI
RCVCCYGGGSKWEQSKALEGGAEIVVGTPGRVIDLVKCKATNLQRVTYLVLDEADRMFDM
GFEPQVRSICSHVRPERQALLFSATFPRRVERLARDALHDPVRVQHGAAGEASKLVKQRV
TIFNKPEEKWPWLLENLVDFLSSGSVLIFVTKKLEAEQTAANLGVQQYDALLLHGDLEQA
DRNKVITAFKRQESNILVATDVAARGLDIPHIRTVVNYTVARDIDTHTHRVGRTGRAGVP
GTAHTLLSRDRDKDFAGHLLRNLEGVQQEVPEELMQLAMQSTWFRKSRFKKGKGKNLNIG
GCGLGYKERPGLPAYNDEVSLTASVEKTVEKAGGPATDRLASLKQAFRSQYNQFTASSDH
SWEQTRPVLQPGVNAPANANTDKTERLRKSGKKSRWE