DPGLEAN01060 in OGS1.0

New model in OGS2.0DPOGS202877 
Genomic Positionscaffold7665:+ 615-4779
See gene structure
CDS Length813
Paired RNAseq reads  5
Single RNAseq reads  19
Migratory profilesQuery via corresponding ESTs
Best Bmobyx hitBGIBMGA000891 (7e-60)
Best Drosophila hit  CG8916, isoform B (1e-87)
Best Human hitgamma-aminobutyric acid receptor subunit alpha-4 precursor (2e-39)
Best NR hit (blastp)  cys-loop ligand-gated ion channel subunit [Tribolium castaneum] (3e-115)
Best NR hit (blastx)  cys-loop ligand-gated ion channel subunit [Tribolium castaneum] (7e-99)
GeneOntology terms



  
GO:0004890 GABA-A receptor activity
GO:0045211 postsynaptic membrane
GO:0005230 extracellular ligand-gated ion channel activity
GO:0016021 integral to membrane
GO:0006811 ion transport
InterPro families


  
IPR006201 Neurotransmitter-gated ion-channel
IPR006202 Neurotransmitter-gated ion-channel ligand-binding
IPR006028 Gamma-aminobutyric acid A receptor
IPR006029 Neurotransmitter-gated ion-channel transmembrane domain
Orthology groupMCL16730

Nucleotide sequence:

ATGGAACTCCGTAATTTCCCGATGGACCGTCAATCCTGCCCACTCATTCTTGGCAGCTAT
GCCTATTCCAATCAGCAGCTAGTGTATCAATGGCAGAACTCCCAGAGCGTCAACTTTGTT
CCGGGCATGACATTATCCCAATTTGATCTCATCAGCTTCCCATATAGAAATTTTACATTC
ACCAGACGTGAAGGTGACTTTTCTGTCCTCCAAGTATCTTTCAACCTGAAGCGACACACG
GGGTATTTTCTCATTCAAGTGTACGTGCCCTGCATACTCATAGTGGTACTATCATGGGTA
TCCTTCTGGATTCACAGAGAGGCGACATCAGACCGCGTGGGACTCGGCATCACGACCGTT
TTAACTCTGTCAACAATCAGCTTGGACTCACGCACAGATCTTCCGAAGGTGCGTTACGCC
ACTGCACTCGACTGGTTTCTTTTGATGAGCTTCTTCTATTGTATCGCTACACTGCTTGAG
TTTGCTGGTGTACACTATTTTACAAAGGTCGGTTCCGGCGAAATAGTGATTGATGATTCA
GAGTGGGAAGACTTGATCGAGGAGGTCGGTGGTGACGCCTTCGCAGCGAGACAGCTGGCT
GTGAGGAGACGAAGTTCCGCCAGATCTTCAAATAACTTTAGTATGCCCGGCGTATCAGAC
AATGAAGGCGAAATGCAGGACCAGCAATCAGTTCGTCTGACGATGGAGCGCACCACGCAG
ACAGAGGTGCGGGTGCCTCACTGGAGACAACTGCTGTACTGTCTAGCAGGAGACGATCAA
TATAGAAGGCAGCGGCAAAGAGAAGCTGGTTAG

Protein sequence:

MELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRNFTF
TRREGDFSVLQVSFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTV
LTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKVGSGEIVIDDS
EWEDLIEEVGGDAFAARQLAVRRRSSARSSNNFSMPGVSDNEGEMQDQQSVRLTMERTTQ
TEVRVPHWRQLLYCLAGDDQYRRQRQREAG