| New model in OGS2.0 | DPOGS209847 |
|---|---|
| Genomic Position | scaffold2339:- 4487-8220 |
| See gene structure | |
| CDS Length | 828 |
| Paired RNAseq reads | 242 |
| Single RNAseq reads | 1381 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008073 (6e-138) |
| Best Drosophila hit | CG6015 (3e-123) |
| Best Human hit | pre-mRNA-processing factor 17 (1e-115) |
| Best NR hit (blastp) | PREDICTED: similar to CG6015-PA [Apis mellifera] (1e-132) |
| Best NR hit (blastx) | PREDICTED: similar to CG6015-PA [Apis mellifera] (4e-133) |
| GeneOntology terms | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR015943 WD40/YVTN repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR019775 WD40 repeat, conserved site IPR001680 WD40 repeat IPR019781 WD40 repeat, subgroup |
| Orthology group | MCL12872 |
Nucleotide sequence:
ATGGGCCGATCCTGGATTGAGGCTCCGAGAAGTGAAACACAATTACGCAGTGACACACCA
CCAGACAAATGTTTCCTACCGAAAGCTCATATATTCACGTGGAAGGGTCACACCAAGGGT
GTGTCCGCTGTTCGTTGGTTTCCTCGTACAGCTCACCTCATGTTGTCAGCCGCTATGGAT
TGCAGGGCAAAGATCTGGGAGGTGTATGGTGATCGTCGTTGTATAAGAACATACTTTGGT
CACAGACAGGCGGTTAGAGATGTCAACTTCAATAACACTGGCACACTAAAGAACACATAT
GATCGATACATCAAGTTATGGGACACGGAGACCGGTGACTGTGTGTCCCGGTTCACCTCC
AGGAAGGTCCCGTACTGTGTGAAGTTCAACCCGGACGAGGACAAACAACACCTCATCGTT
GCCGGAACCTCAGATAAAAAAATTATATGTTGGGACACTCGTAGCGGTGAGATAGTTCAG
GAGTATGACCGTCACCTGGGCGCTGTCAACACTATCACCTTCGTGGATGACAACAGACGC
TTCGTCACCACCTCCGACGACAAAAGTCTAAGGGTCTGGGAGTGGGACATCCCGGTTGAC
ATGAAGTATATAGCGGACCCATCGATGCATTCCCTACCAGCGGTGACTGCGGCGCCAAAC
GGCAAATGGCTGGCTTGTCAGTCGATGGACAATAAAGTTGTGGTCTTCTCAGCGCTGAAC
AGGTTCAAGATGAACAGGAAGAAGACTTTCACCGGACATATGGTTGCCGGGTACGCTTGC
AGTGTGGACTTTTCACCAGATATGAGGTATGACTCAAGACATACATAA
Protein sequence:
MGRSWIEAPRSETQLRSDTPPDKCFLPKAHIFTWKGHTKGVSAVRWFPRTAHLMLSAAMD
CRAKIWEVYGDRRCIRTYFGHRQAVRDVNFNNTGTLKNTYDRYIKLWDTETGDCVSRFTS
RKVPYCVKFNPDEDKQHLIVAGTSDKKIICWDTRSGEIVQEYDRHLGAVNTITFVDDNRR
FVTTSDDKSLRVWEWDIPVDMKYIADPSMHSLPAVTAAPNGKWLACQSMDNKVVVFSALN
RFKMNRKKTFTGHMVAGYACSVDFSPDMRYDSRHT