New model in OGS2.0 | DPOGS205351  |
---|---|
Genomic Position | scaffold1782:+ 5085-6585 |
See gene structure | |
CDS Length | 861 |
Paired RNAseq reads   | 378 |
Single RNAseq reads   | 1154 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007263 (2e-81) |
Best Drosophila hit   | CG13096 (5e-26) |
Best Human hit | ribosomal L1 domain-containing protein 1 (3e-20) |
Best NR hit (blastp)   | PREDICTED: similar to ribosomal L1 domain containing 1 [Apis mellifera] (6e-50) |
Best NR hit (blastx)   | PREDICTED: similar to ribosomal L1 domain containing 1 [Apis mellifera] (5e-49) |
GeneOntology terms    | GO:0006412 translation GO:0006396 RNA processing GO:0003735 structural constituent of ribosome GO:0003723 RNA binding GO:0005840 ribosome |
InterPro families    | IPR002143 Ribosomal protein L1 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich |
Orthology group | MCL14482 |
Nucleotide sequence:
ATGGAGATTCGATGCATTAAAATACCACACTCTAAAGGGAACATCAAATTTGTACTCCCG
CACAGTACAGTATTATCATCTAAGGAGGTTTGCCTTGTAACACCAGACATCAAGAAAGGA
AAGAAAGTGGATCATGAGCCTACTGTAGACAAATGGGAGGAATTGCTCCGAGGAGCCGGA
GTTACCAGTGTCAAGACCATCCTCCCTATGAGGCAACTAAGAGTGGAGTATGACCAGTTT
GAATTGAAGCGCAGATTGTTGACTCAACATGACTTCATAATGGTCGACACAAGAGTTCTA
AACCACGTGTCTCACATCTTGGGAAAGATGTTCTTCAAGAAACACAATATGTTGATACCC
GTCAAGATAGATGAAACGAAAGATGTCAAGAAAGATATTGATGTTGGCTTAAGGACTGTC
ATGTTGAGAATCAGTGCGGGTCAAACTACCACCATAGTTGTCGGACACACCGGCATGCAG
CAGAATGATATTAAGGAAAACATTTTAGCGGTTGTCAATATGTTGAATAAGAAGTTTCCA
GGCGGCGAAGCTAACATCAGAGGTCTAGCTATAAAGCTACCATTGTCACTTTCTCTGCCA
ATATATATGACACTGAGGCCAGGCAGTTCTGTAAAAACGGTGCCAAAACTTAAACACCCT
AAGCCAAAGTCACATGTTATGTATGAGGATGAGTTATCAACTCATCTCAGGAGTACTGTG
AGAGTCAATCCCGATGGAACTGTTAAATTGAAATTACAGCCACAGAAAAAAAAAGAAAGA
ATTGTGGAAGATGACATTCTAAGTGATGGTGATGACAATCAAGAAGATGATGAAATGGAT
GATGATGGTGATGAAGAATGA
Protein sequence:
MEIRCIKIPHSKGNIKFVLPHSTVLSSKEVCLVTPDIKKGKKVDHEPTVDKWEELLRGAG
VTSVKTILPMRQLRVEYDQFELKRRLLTQHDFIMVDTRVLNHVSHILGKMFFKKHNMLIP
VKIDETKDVKKDIDVGLRTVMLRISAGQTTTIVVGHTGMQQNDIKENILAVVNMLNKKFP
GGEANIRGLAIKLPLSLSLPIYMTLRPGSSVKTVPKLKHPKPKSHVMYEDELSTHLRSTV
RVNPDGTVKLKLQPQKKKERIVEDDILSDGDDNQEDDEMDDDGDEE