| New model in OGS2.0 | DPOGS205083 |
|---|---|
| Genomic Position | scaffold62:+ 38539-46050 |
| See gene structure | |
| CDS Length | 2523 |
| Paired RNAseq reads | 9462 |
| Single RNAseq reads | 22452 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006878 (0.0) |
| Best Drosophila hit | myospheroid (0.0) |
| Best Human hit | integrin beta-1 isoform 1A precursor (5e-149) |
| Best NR hit (blastp) | integrin beta subunit 1 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | integrin beta 1 [Pseudoplusia includens] (0.0) |
| GeneOntology terms | GO:0007417 central nervous system development GO:0007517 muscle organ development GO:0008305 integrin complex GO:0007391 dorsal closure GO:0007494 midgut development GO:0016477 cell migration GO:0016203 muscle attachment GO:0016339 calcium-dependent cell-cell adhesion GO:0007157 heterophilic cell-cell adhesion GO:0007160 cell-matrix adhesion GO:0050839 cell adhesion molecule binding GO:0005925 focal adhesion GO:0016340 calcium-dependent cell-matrix adhesion GO:0004872 receptor activity GO:0007427 epithelial cell migration, open tracheal system GO:0007411 axon guidance GO:0007608 sensory perception of smell GO:0007426 tracheal outgrowth, open tracheal system GO:0008340 determination of adult lifespan GO:0007475 apposition of dorsal and ventral imaginal disc-derived wing surfaces GO:0007155 cell adhesion GO:0008360 regulation of cell shape GO:0005488 binding GO:0007229 integrin-mediated signaling pathway GO:0031252 cell leading edge GO:0035099 hemocyte migration GO:0006930 substrate-bound cell migration, cell extension GO:0035160 maintenance of epithelial integrity, open tracheal system GO:0030718 germ-line stem cell maintenance GO:0005886 plasma membrane |
| InterPro families | IPR015812 Integrin beta subunit IPR002369 Integrin beta subunit, N-terminal IPR014836 Integrin beta subunit, cytoplasmic IPR012896 Integrin beta subunit, tail IPR013111 EGF, extracellular IPR016201 Plexin-like fold |
| Orthology group | MCL10202 |
Nucleotide sequence:
ATGTATACACGATCGATTTTACTATTGTGTGTGTGGGCGAGCTTGTTTGTGGCGTGTTTT
GGACAACGCGCTGAACAACTTCTCGCACAGAACCCATGCTCGAGCAAGACGACTTGCAGC
GACTGCGCCCGGACGCCCACCTGCGCCTGGTGCTTCGCCCCCGAATTCAATGGCCCCCGG
TGCTTCAACCCAGCTATGGAAGGCGGCACCGCTGGCTGTGACGAAGCCTACATATTTAAT
CCGGATAACCAACAGTCAATCGACGCTTCTTTTAACAGAGAATTGACTAGAGCCAAAGGT
CGTATGGGCGTTGGGATGGAGTCCTCTTACTACGAAGAATCTATGAGTAGCAGCAGCAGC
AGCAGCAGCAGTAGTAGCAGTAGCAGCAGTAGCATCAAGGGCGGTGGTTACATGGGAGCA
GCGGGCGGTGAAAACCTGGTGCAGATTAAACCACAAAGAGTTAAACTACAATTACGGATG
AATCAAATGCAAAAGATGTCATTCTCGTACGCTCAAGCCCAAGACTATCCGGTTGACCTC
TACTACCTCATGGATCTCAGTAGGTCTATGAAGAACGACAAGGAGAAGCTCAGTACACTA
GGAAGTCTACTGTCTAGTACTATGAGAAATATCACATCCAACTTTAGAATTGGTTTTGGT
TCCTTCGTGGATAAACTAGTCATGCCATATGTGTCCACAGTACCAAAAAATTTGATATCG
CCGTGTGACGGTTGTGCTGCCCCCTACGGTTACAAGAATCAAATGTCTCTGAGCAACGAC
ACGGACTTTTTCGATAAAGCTGTAGCCCGAGCTGACGTATCCGGTAACTTGGACGCCCCG
GAAGGAGGCTTTGACGCTATCATGCAGGCTGTGGTTTGTAAGAGAGAGATCGGCTGGAGG
GAACATGCAAGAAAACTACTCGTGTTTTCAACTGATGCTGGGTTCCATTACGCTGGTGAC
GGAAAGTTGGGAGGTATAGTCCAGCCTAATGATGGTGAATGTCACATGGAAGATAATTCA
TACACACACTCAACAAAACAGGATTATCCAAGCATTTCACAGATCAATTTGAAGGTTAAA
GAGCACGCTATAAACGTGATATTCGCTGTGACAGCTGAGCAGATCAATGTGTATGAGCAG
CTCAGCAAACATATTGAGGGTTCCAGCTCGGGTATACTGAGTGAGGACTCGGACAATGTG
GTTGACCTTGTTAGAGAGCAATACAATAAAATTACTTCAGCTGTTGAGATGAAGGATACA
TCTAGTGACGCGGTACAGATATTGTATTACTCATCATGTTTGGGCGGCAAGCTGCAGCAG
ACTAACAAGTGTGAGGGGCTTAAGGTTGGAGATGTTGTGGAATTCACAGCGGAAATAACA
TTAAAGGAATGTCCCAAGGACCGTAATAAGTGGAAACAGATGTTTACTATTTATCCTGTC
GGTGTGTCTGAAAGTTTAACTGTAGAGTTGGAAATGCTCTGTGACTGTCCCTGTGAACAT
CCCGGGCACCATGCGTACAACGACAGTCCATTAGTATGTAGCGGGCAGGGTATCTCTCAG
TGTGGAGTCTGTGTGTGTCCTCCGGGGCGCTTCGGTAAGAACTGCGAGTGTTCAGCCCAC
GGCGGCGTGTCCGTGGAACAGGAGCGAGGCTGCAGACCGACCAACGCTAGCTCTGGACCT
ATGTGTTCCAACAGAGGCATGTGCATCTGCGGTATATGCGAGTGTAACAAGATGGACGAC
CCGCTGAAGGTGATATCTGGTCCGTTCTGCGAGTGCGATAACTTCACGTGCGACATGAAC
AAGGGTCAGCTGTGTTCTGGCCCTGATCACGGGGAGTGCGTGTGCGGAAAGTGTTCCTGT
CACCCGCAGTACAGCGGCCCCGCCTGCCAGTGTCTTAAGGACCAGGCGCCTTGCATGTCA
CCCGAAAACAACAAAATCTGCAGCGGCAATGGTAAATGCGTTTGCGGTCAGTGCGTGTGC
AATGTTGATGAAGATAGACACTACTACGGAAAATATTGTGAGAACTGTCCGACGTGCCCC
GGCCGTTGTGAGGACTTCAAGCAGTGCGTGTTGTGTGAAGTACACAAGCGCGGGCCCCTG
TACCGGGACGAGGCGCCGGAGTGCGGGGACTGCGCCCTCTACCCCGAGGTCGTCGAGGGA
AAGATAGAAGCAAACGAGACGCTGAATGAACATTTGTGTAGTTTCTACGACGACGAAGAC
TGTTTGTACGTTTACGTGTATTCATACAACGAAACAAGGCATTTGCACATCAGAGCACAG
AAAGAACACGAATGTCCTAAAAAGGTTTATATCCTGGGTATCGTGTTGGGTGTGATAGCG
GCCATCGTGCTGGTGGGGCTGGCGCTGCTGATGCTGTGGAAGATGGTCACCACCATACAC
GACAGGAGAGAGTTCGCACGCTTCGAGAAGGAACGCATGATGGCTAAGTGGGACACGGGT
GAAAATCCGATTTACAAGCAAGCGACATCTACATTCAAAAATCCGACCTACGCCGGGAAA
TAG
Protein sequence:
MYTRSILLLCVWASLFVACFGQRAEQLLAQNPCSSKTTCSDCARTPTCAWCFAPEFNGPR
CFNPAMEGGTAGCDEAYIFNPDNQQSIDASFNRELTRAKGRMGVGMESSYYEESMSSSSS
SSSSSSSSSSSIKGGGYMGAAGGENLVQIKPQRVKLQLRMNQMQKMSFSYAQAQDYPVDL
YYLMDLSRSMKNDKEKLSTLGSLLSSTMRNITSNFRIGFGSFVDKLVMPYVSTVPKNLIS
PCDGCAAPYGYKNQMSLSNDTDFFDKAVARADVSGNLDAPEGGFDAIMQAVVCKREIGWR
EHARKLLVFSTDAGFHYAGDGKLGGIVQPNDGECHMEDNSYTHSTKQDYPSISQINLKVK
EHAINVIFAVTAEQINVYEQLSKHIEGSSSGILSEDSDNVVDLVREQYNKITSAVEMKDT
SSDAVQILYYSSCLGGKLQQTNKCEGLKVGDVVEFTAEITLKECPKDRNKWKQMFTIYPV
GVSESLTVELEMLCDCPCEHPGHHAYNDSPLVCSGQGISQCGVCVCPPGRFGKNCECSAH
GGVSVEQERGCRPTNASSGPMCSNRGMCICGICECNKMDDPLKVISGPFCECDNFTCDMN
KGQLCSGPDHGECVCGKCSCHPQYSGPACQCLKDQAPCMSPENNKICSGNGKCVCGQCVC
NVDEDRHYYGKYCENCPTCPGRCEDFKQCVLCEVHKRGPLYRDEAPECGDCALYPEVVEG
KIEANETLNEHLCSFYDDEDCLYVYVYSYNETRHLHIRAQKEHECPKKVYILGIVLGVIA
AIVLVGLALLMLWKMVTTIHDRREFARFEKERMMAKWDTGENPIYKQATSTFKNPTYAGK