| New model in OGS2.0 | DPOGS215558 |
|---|---|
| Genomic Position | scaffold860:+ 28669-33640 |
| See gene structure | |
| CDS Length | 1110 |
| Paired RNAseq reads | 6857 |
| Single RNAseq reads | 18371 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010687 (5e-156) |
| Best Drosophila hit | CG6439, isoform B (2e-134) |
| Best Human hit | isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform a precursor (7e-97) |
| Best NR hit (blastp) | PREDICTED: similar to CG6439 CG6439-PA [Tribolium castaneum] (2e-153) |
| Best NR hit (blastx) | PREDICTED: similar to CG6439 CG6439-PA [Tribolium castaneum] (1e-139) |
| GeneOntology terms | GO:0004449 isocitrate dehydrogenase (NAD+) activity GO:0005739 mitochondrion GO:0006099 tricarboxylic acid cycle GO:0051287 NAD or NADH binding GO:0000287 magnesium ion binding GO:0055114 oxidation reduction GO:0005875 microtubule associated complex |
| InterPro families | IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site IPR001804 Isocitrate/isopropylmalate dehydrogenase IPR004434 Isocitrate dehydrogenase NAD-dependent |
| Orthology group | MCL14959 |
Nucleotide sequence:
ATGTCTCTTATAACTAGAAACCTGTGTCGTACTCTAGTCCAGGGATCTCAGCATGTCAGC
AAAGGTTTGCATACAAGTGCAGTAAACTCTGAAAAAAACGTATGTTTCGCGCCACTATCA
ATTAGCAGCCTGCAAACAAGCAAGGAAGGTCGCATCAAGTGTACTCTTATACCGGGAGAC
GGTGTTGGTCCAGAGCTTGTGTATTCGGTACAGGAGGTGTTTAAGGCGACCAGCATTCCT
GTTGATTTTGAATCATTCTTTTTCTCTGAAGTTAATCCAACATTGAGTGCGCCTTTAGAA
GATGTTGTTAGCTCAATTGCTAGGAATAAGATATGTATCAAGACGCTCAACATGAAGCTC
CGTAATGCCTTGGATCTGTACGCTAATGTGGTGCATGTCAAGTCACTACCTAATGTCAAA
TGCAGACACACAGATGTTGATTGTATCATCATAAGAGAACAAACTGAAGGGGAATACTCT
GCACTGGAACATGAATCGGTTCCCGGTGTTGTTGAATGTCTCAAGATAATAACGGCTGCT
AAGTCTGAACGTATAGCTAAATTCGCTTTTGACTACGCGGTCAAGATGCGCCGTAAGAAG
GTCACGGCTGTGCACAAGGCTAACATCATGAAGCTGGGCGACGGATTGTTCCTGAGGAGC
TGTGAGGAGATGGCAAAATTATATCCAAGGATACAGTTTGAGAAGATGATTGTTGACAAT
TGCACGATGCAAATGGTCTCCAACCCGAACCAGTTTGATGTGATGGTGACACCCAACTTG
TACGGCAACATAGTGGACAATCTGGCCAGCGGTTTGGTTGGTGGAGCCGGGGTGGTGGCT
GGAGCCTCATACAGCGCTGACTGTGCTGTGTTCGAACAGGGTGCTCGTCATATATTCTCT
GGTGCTGTCGGTAAGAACATCGCCAATCCGACAGCTATGCTTCTATGCTCGGCCAATTTG
CTGTCTCACGTCAATCTGCACTCCTATGCTGATATGATCAAGAACGCTATCAATAAAGTT
CTAAAAGACGGCAAGGTGAGAACAAAGGATTTGGGCGGACAGTCCACAACAAAGGACTTC
ACCAACGCCATCATACACTGCCTCGCTTAG
Protein sequence:
MSLITRNLCRTLVQGSQHVSKGLHTSAVNSEKNVCFAPLSISSLQTSKEGRIKCTLIPGD
GVGPELVYSVQEVFKATSIPVDFESFFFSEVNPTLSAPLEDVVSSIARNKICIKTLNMKL
RNALDLYANVVHVKSLPNVKCRHTDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAA
KSERIAKFAFDYAVKMRRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDN
CTMQMVSNPNQFDVMVTPNLYGNIVDNLASGLVGGAGVVAGASYSADCAVFEQGARHIFS
GAVGKNIANPTAMLLCSANLLSHVNLHSYADMIKNAINKVLKDGKVRTKDLGGQSTTKDF
TNAIIHCLA