| New model in OGS2.0 | DPOGS211883 |
|---|---|
| Genomic Position | scaffold127:- 27797-38732 |
| See gene structure | |
| CDS Length | 5748 |
| Paired RNAseq reads | 1594 |
| Single RNAseq reads | 3698 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001256 (0.0) |
| Best Drosophila hit | CG8909, isoform B (0.0) |
| Best Human hit | low-density lipoprotein receptor-related protein 4 precursor (0.0) |
| Best NR hit (blastp) | low-density lipoprotein receptor, putative [Pediculus humanus corporis] (0.0) |
| Best NR hit (blastx) | low-density lipoprotein receptor, putative [Pediculus humanus corporis] (0.0) |
| GeneOntology terms | GO:0005041 low-density lipoprotein receptor activity GO:0005509 calcium ion binding GO:0016020 membrane |
| InterPro families | IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR000033 LDLR class B repeat IPR009030 Growth factor, receptor IPR006210 Epidermal growth factor-like IPR001881 EGF-like calcium-binding IPR018097 EGF-like calcium-binding, conserved site IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site IPR011042 Six-bladed beta-propeller, TolB-like |
| Orthology group | MCL10054 |
Nucleotide sequence:
ATGAAGATTCAGCTCAGGTCACTTAGAGCAGCCATCATGAAACACATCACCATGTTCCAG
GCCGTCCTGATAACGGTCTATATTATAACGATACATGGACACGTTAAGGGTGAGGATGCA
GTGCCACCCCAACGAACTCCCAATGGAACTGTTGAAGTACCGGACCCTCGTTCAGCCATC
GGTCGCGTGCCTCCTTACCAGCCGCCTGCCATCGGGCTCCCGGGCCCCATGCAAGTCCCC
GGCTTCCGACCCCACAACCCTCACACTCGAGTAGACGGCTGGCATCCAAATGGCCGCATT
AGTTCCAAAGGATCCTACGTGATCGCCGATGACCTTGAAGATGACGATGACGGCGGATGT
CACATATCATGCTCCAAAGAATTTTTTTCTTGTCAGACATCATGCAAATGCATACCAATG
GAGAAGCGTTGCGATGGCAAAGTCGAATGTGTGGACGCTGAGGACGAGGCCGGCTGCACT
CCGTCGTGCGACGAGCACGACAACCGAACGATCTGCCTCAACACCAGGGTGTGCATCGCT
ATCGAATGGATCTGTGACGGTGACAACGATTGCGACGATTTCTCCGATGAGACACATTGC
GGAGGTGTGACGAATTGTACTTCAGATCAATTCCAATGTGGCAACGGACTGTGCATAGAT
AAAGACTGGGTCTGCGATGGTGCTGATGACTGTCGTGACAACTCCGACGAGATCCATTGC
CCCAAAGGAAAATGCCGAGACAACCAGTTCACCTGTCTGACGGGAGAGTGTCTGGCGCTT
CACTGGCGCTGTGATAAGGAAGCTGACTGTCCTGATAACTCGGACGAATCCGAATGTCCC
GTGGAACTGTTACAATGCGGCGAGAATGAGATCCAGTGTAACAACAAGAAGTGTGTGAGA
AAAGATTTCCAATGTGACGGTGACAACGACTGCGGCGATTGGACCGACGAGGACTCCTGT
CCCGTTCTGCCCGGAAGTTGCAGTTCGTCTGAATACAAATGCAAGGATGGTAAGTGCATC
CCGGAGCGTTGGAAATGCGATGCGGAGCGCGACTGTGAGGACGGTGATGATGAAGTGAGC
TGTGAACCGCACGGAGTCAGGAACTGCACCGTCGACGAGTACACTTGCATTGATAGGCGA
TGTATATCGAAAACTTGGCTCTGCGATGGACTTAGGGATTGCAGCAATGGAGAAGATGAA
TTAAACTGTGAAGTATTTTGTGAGAAGGATCAATACATGTGTAAATCAATTAAAAGCGAC
GCATTCAGAAACTGCGTAAATAGGAAACACGTGTGTGATGGTATGAAGGACTGTCCTCAA
GGAGACGACGAAGAGAAATGTCCCACAAAAAGAAAGTGCCGGCCAGATGACAAATGTGAA
CGACAATGCATTACAACCTTCGATGGTTTCCCAGCTTGCGCATGTCCTATTGGTTATTTG
TTGGATAATAACGGTTATAGCTGCCAGGATATAGACGAGTGCATGTACGAACAAGACCCA
GTTTGCTCACAAACCTGTTCAAATACCCTCGGCAGTTACATGTGTGGATGCATGACTGGT
TATGTGCTGAGACCTGATGCCCGGTCCTGTAAGGCTACCGGGGAGTCACCCACTTTATTG
TTTTCTAATGGTGTTGGAATACGACAGGTCTGGCTTACTGGAGAAAACTACATGTCAATT
TTAAAAGGCTTACACAAAGCTATGGCTCTAGACTATCATTACAAGAAAAACCTCGTATTT
TGGACTGAAAATAACATGAGAGTTATAAGAGTTGCACCGTTGGATAGTAATAATATGACG
GATGTGGTTAGATGGGGTATAGAAACACCAGGTGGTTTAGCCGTGGACTGGATCCATGAT
CTTCTCTTCTGGACAGACTCTGGCACAAGACGAGTGGAAGTGGCCACGCTGGACGGCTCC
CAGCGAGCAGTTCTAGCCGCTAGTGACGTCGACAAGCCACGAGCTATAGCTGTTCATCCC
GGAGATGCTCTCGTCTTTTGGACTGATTGGGGACCTAATCCAAAAATAGAACGTGCAAAT
ATGGACGGTGATAATCGCAAGAGCATTATAGTCCATAACATATTTTGGCCCAACGGCTTG
ACTATTGATTATACTGAATCCACCATTTATTGGGCCGATGCTAAGCATCATGTTATTGAA
AAAGCATCCTTCAACGGTTTGGACAGGAAGCGCATTATAAACAAGGGCTTACCTCATCCA
TTTGCGTTAACATTGTTTGAGGACGCCATATACTGGACCGACTGGCACACGAAGAGTATT
TCAACTGTCAATAAGAAAACTGGCATGGGCATGCAGACTGTCCATGCGAGTTTATATGTC
CCCATGGATATACAGAGCTTCCACCCACTACGCCAGCGCTCGTATAAGAATCGTTGCGTC
AACAATGGCGGCTGTTCTCACATGTGCCTCCCAGCGTCGTCTGAACGAACGTGTCGCTGT
CCTGTAGGGTTCAACCTTCATTCGGACGGACGAACCTGTGAAGAAACTCCAGAGAAGTTA
CTTCTCTATGCTCATCGGAAGGATATACGACTTAAGCAATTAAATCCACGAAAGCACATG
GACTCCTTGGATATGGTTATACCAGTTGAAAATATTAAGTCCGCTGTAGCTCTAGACTGG
GATCACAACAGCAATTCTATATTTTGGACTGATGTAGAAAAGGACACGATTAATAAAGCC
TTCTTGAATGGTTCTCATCAAACTATTATTGTTGGCTCAAACTTAATATCCCCAGCCGGA
CTTGCTTATGATTGGCTAACAAATAAATTATATTGGACCGACGCCGGCACTAACAGGATT
GAAGTAGCAAATGCAAATGGTAGCATGCGGACCCTGTTGGCTTGGGAAAATATTGACAAA
CCTAGAGATATAGTGCTTGATCCAATCGGTGGTATAATGTATTGGTCCGATTGGGGCTCT
TCGCCCTGCATTGAGCGCGCAGATATGGATGGTGGCAATAGACAACGTCTCATCTTTGGT
GACATGACGTGGCCGAATGGCCTTGCGCTTGATTTACCAAACAAACGCATATATTGGACC
GATGGTGGTAATCGTACCATTGAATATGCTAATCTAGATGGCACTGGTCGTACTGTTTTA
ATAGGTCAAGATCTAACACATCCTTTTGGACTTGATTTATACGGTGATGAGGTATTTTGG
ACCGACTGGAACACCCAGTCCATCCAAGCCGCAAACAAGTATACTGGAAAACAAAGGAGA
ACATTAGGAGCTGGTGTCGAAGGACTTATGGATGTGAGGGTATTTCACAAGGAACGGATG
AGCAGTAGAAATCCCTGCAGTAATAATAACGGCGGCTGTTCACACTTATGTTTATTAAAA
CCAATGGGGCGGAGTTGCGCTTGTCCTATTGGTATTAAATTAAGCAATGACGGCAGAATT
TGTACGAATGGACCAATCAACTTCTTAATCTTTGCTCATCGCGTTGATATACGTATTGTG
TCTTTAGATGTACCGTACCTTGTCGATGTTGTTCTACCGTTACCTGCTCTAAAGAATGCT
CTTGGAGTTGACGTTGACCAGAGAACTGGACTTATATATTGGACTGACACCGGGGAACGC
AAAATAAAACGGGCTAACAAAGAAGGTCATCAAAATGAAACTATCATTGGACGAGGTCTT
CATACTGCTGATGGAATAGCTATTGATTCAGCCGGGCGAAAGATTTATTGGACTGACGGT
GGAAGAAATAGTATCGAAGTTGCAGAACTTAACGGCACAAATAGAAAAGTTCTTGTGTGG
ACTGGGTTAGATTCTCCGCGAGCTATAGCATTGCATTACGATTACGGCTTTATGTTTTGG
TCTGATTGGGGAACTTCAGCGAAAATCGAGAGAGCTGACATGGACGGGAAAAACAGACGA
ATTATTGTCGATAACAACATCAAGTGGCCGAACGGACTAGCCATCGACAGAATTGAAAGT
CGTCTGTACTGGAATGACGCCAAGGTTTTGACAATAGAAAGCTCAAACTTTAATGGACAC
GACCGTCGCACTCTTCTCACTCAGGTACCTTATCCGTATGGCATCGTGATCGTCGGACAA
CACATTTATTGGACTGATTGGAAGACAAAAGCATTGCATAGAGCAGACAAGTCCAATGGA
AGAGAACAATTGAAGATAAGGGAAAATCTTGAAGGACTTATGGACATAAGAGCTATACAG
GGCGATCACATTTTAGAAAACGCTTGTGGAAAAAATAATGGTGGTTGTTCTCACCTCTGT
TTACGCTCGCCCCAAGGTTACACGTGTGCGTGTCCGACAGGATTATTATTTAAGAATGAG
TCGGAACTTAATCCTAAAACATGTAAGAAACATCCCGATAATTTCCTTGTATTCGCCGCC
AGAGGAAGTATTGCATTGATATCACTAGACACTCCTGAGCAGTGGGATATTACGTTGCCA
GTCAAGGATATACAAAACTCAGTTGCCGTGGATTATCATTGGGAACGGAAATTGATATTC
TTCACGGATGTCTATCATAATGAGATACGATCAATAGACATGGAAAACATGAGCGATTCC
AGAGTCATCGTGAACACTGGCCTTGACACACCTAATGGATTGGGAGTGGACTGGATTGCG
AATAACATCTACTGGACCGATAATGACTTCAAGGTCGTGGAAGTAGCAAGACTTGATGGT
TCATCAAGAAAAACTCTTATTACTGGCCTTACGGAACCTAGAGCTTTGGCTTTATTCCCT
GCTAAGGGTTTCCTATACTGGAGTGACTGGGGTGAGAGTCCTAACATTGAAAGAGCTTCT
TTGGATGGTAGTCAAAGAAGAATTATAGTGAATCATGACTTAGGCTTTCCCAACGGCATA
ACAATTGATTATAAAGACAGGCGACTTTACTGGACAGATGCTCTAAAAGACAGAATTGAC
ACGTCTGATTTGAACGGTCAGCATAGGGTTCAACTTATACCTGAAGCTAAGAATCCATTT
GGAATGACTCAGTTTAATAACTACATTTATTGGACCGATTGGTATAAAAAATCAGTGATG
AGAGCAGATAAGAGAACTGGTAAAAACGTGACGGCAATACGAACGGATTTAGAGATGGTC
ATGGAAATTAAAGCTGTGTCTTCTGAGAAACAACACGGTTGGAACCCATGCAAGGAAGAT
AACGGAGGATGCTCACATTTGTGTTTGTTTAGAGGACATGATTACGTTTGCGCTTGTCCA
GATGCTTTTGATGACAAAGTTTGCTCAACGACTCCAAAACTCCGCGTTGATTTACGAATG
CCAGCACACTACCCTTCATTCTACGACTACATGGACATCGAGATCGGTAACAAAATTGCA
ATGCATCCCACAACAGCGCCATCCACTAATATCGGAAGTATTGTAATTGGAGTGGCAGTT
GCAGTTTTTATAATTCTTGCGATATTAACAACTGCTTTTGTATGCTTTAAAATGCGACGC
AATCGAGACGGTGAGATAAAGGAAAACTACCGCGAGTCAAGCGGACACATTTCCTTCCAT
AATCCCAATTACAGCTGTGCTACGATGGTAGGAGAACCCGCGGAGAGAAGGCAGAATAGG
TTCCAGGGTATATTCAAATACGATAAAAGTCAGGGGCGTGTAACTAACGTATACATGCCG
GAGGGCACGAGCCTACTACCACCAGCGCCTCCTCCACCCCCACACCGAGTCCCTCCACGA
CCAGCAAACGATGACTTCGAACCTGTCACTCTACACCCATTCGCTTGA
Protein sequence:
MKIQLRSLRAAIMKHITMFQAVLITVYIITIHGHVKGEDAVPPQRTPNGTVEVPDPRSAI
GRVPPYQPPAIGLPGPMQVPGFRPHNPHTRVDGWHPNGRISSKGSYVIADDLEDDDDGGC
HISCSKEFFSCQTSCKCIPMEKRCDGKVECVDAEDEAGCTPSCDEHDNRTICLNTRVCIA
IEWICDGDNDCDDFSDETHCGGVTNCTSDQFQCGNGLCIDKDWVCDGADDCRDNSDEIHC
PKGKCRDNQFTCLTGECLALHWRCDKEADCPDNSDESECPVELLQCGENEIQCNNKKCVR
KDFQCDGDNDCGDWTDEDSCPVLPGSCSSSEYKCKDGKCIPERWKCDAERDCEDGDDEVS
CEPHGVRNCTVDEYTCIDRRCISKTWLCDGLRDCSNGEDELNCEVFCEKDQYMCKSIKSD
AFRNCVNRKHVCDGMKDCPQGDDEEKCPTKRKCRPDDKCERQCITTFDGFPACACPIGYL
LDNNGYSCQDIDECMYEQDPVCSQTCSNTLGSYMCGCMTGYVLRPDARSCKATGESPTLL
FSNGVGIRQVWLTGENYMSILKGLHKAMALDYHYKKNLVFWTENNMRVIRVAPLDSNNMT
DVVRWGIETPGGLAVDWIHDLLFWTDSGTRRVEVATLDGSQRAVLAASDVDKPRAIAVHP
GDALVFWTDWGPNPKIERANMDGDNRKSIIVHNIFWPNGLTIDYTESTIYWADAKHHVIE
KASFNGLDRKRIINKGLPHPFALTLFEDAIYWTDWHTKSISTVNKKTGMGMQTVHASLYV
PMDIQSFHPLRQRSYKNRCVNNGGCSHMCLPASSERTCRCPVGFNLHSDGRTCEETPEKL
LLYAHRKDIRLKQLNPRKHMDSLDMVIPVENIKSAVALDWDHNSNSIFWTDVEKDTINKA
FLNGSHQTIIVGSNLISPAGLAYDWLTNKLYWTDAGTNRIEVANANGSMRTLLAWENIDK
PRDIVLDPIGGIMYWSDWGSSPCIERADMDGGNRQRLIFGDMTWPNGLALDLPNKRIYWT
DGGNRTIEYANLDGTGRTVLIGQDLTHPFGLDLYGDEVFWTDWNTQSIQAANKYTGKQRR
TLGAGVEGLMDVRVFHKERMSSRNPCSNNNGGCSHLCLLKPMGRSCACPIGIKLSNDGRI
CTNGPINFLIFAHRVDIRIVSLDVPYLVDVVLPLPALKNALGVDVDQRTGLIYWTDTGER
KIKRANKEGHQNETIIGRGLHTADGIAIDSAGRKIYWTDGGRNSIEVAELNGTNRKVLVW
TGLDSPRAIALHYDYGFMFWSDWGTSAKIERADMDGKNRRIIVDNNIKWPNGLAIDRIES
RLYWNDAKVLTIESSNFNGHDRRTLLTQVPYPYGIVIVGQHIYWTDWKTKALHRADKSNG
REQLKIRENLEGLMDIRAIQGDHILENACGKNNGGCSHLCLRSPQGYTCACPTGLLFKNE
SELNPKTCKKHPDNFLVFAARGSIALISLDTPEQWDITLPVKDIQNSVAVDYHWERKLIF
FTDVYHNEIRSIDMENMSDSRVIVNTGLDTPNGLGVDWIANNIYWTDNDFKVVEVARLDG
SSRKTLITGLTEPRALALFPAKGFLYWSDWGESPNIERASLDGSQRRIIVNHDLGFPNGI
TIDYKDRRLYWTDALKDRIDTSDLNGQHRVQLIPEAKNPFGMTQFNNYIYWTDWYKKSVM
RADKRTGKNVTAIRTDLEMVMEIKAVSSEKQHGWNPCKEDNGGCSHLCLFRGHDYVCACP
DAFDDKVCSTTPKLRVDLRMPAHYPSFYDYMDIEIGNKIAMHPTTAPSTNIGSIVIGVAV
AVFIILAILTTAFVCFKMRRNRDGEIKENYRESSGHISFHNPNYSCATMVGEPAERRQNR
FQGIFKYDKSQGRVTNVYMPEGTSLLPPAPPPPPHRVPPRPANDDFEPVTLHPFA