| New model in OGS2.0 | DPOGS211942 |
|---|---|
| Genomic Position | scaffold127:+ 63775-67280 |
| See gene structure | |
| CDS Length | 1002 |
| Paired RNAseq reads | 8 |
| Single RNAseq reads | 68 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000891 (5e-20) |
| Best Drosophila hit | CG8916, isoform B (2e-60) |
| Best Human hit | gamma-aminobutyric acid receptor subunit alpha-5 precursor (4e-24) |
| Best NR hit (blastp) | cys-loop ligand-gated ion channel subunit [Tribolium castaneum] (2e-98) |
| Best NR hit (blastx) | cys-loop ligand-gated ion channel subunit [Tribolium castaneum] (1e-82) |
| GeneOntology terms | GO:0004890 GABA-A receptor activity GO:0045211 postsynaptic membrane GO:0005230 extracellular ligand-gated ion channel activity GO:0016021 integral to membrane GO:0006811 ion transport |
| InterPro families | IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006028 Gamma-aminobutyric acid A receptor IPR006201 Neurotransmitter-gated ion-channel |
| Orthology group | MCL16730 |
Nucleotide sequence:
ATGAATACTCGCGAAAATCTTAGATCTCATTATGTGAACCAGTACGGACTGGAAATCGCA
AACAGAATACGCCGGTTGGAGTACCTCAAGACGAAGAAAGCAAAATTATTACCATCCTTG
AATTTCCTCAAGAGATGCCGGGATCACGACATCATACCAACATGTGTCAAAATATCACCA
AAAAAAGACATCAAACATAGCGGCAGGATACTCCATCAGGCAAGTGACTTTTCTGTCCTC
CAAGTATCTTTCAACCTGAAGCGACACACGGGGTATTTTCTCATTCAAGTGTACGTGCCC
TGCATACTCATAGTGGTACTATCATGGGTATCCTTCTGGATTCACAGAGAGGCGACATCA
GACCGCGTGGGACTCGGCATCACGACCGTTTTAACTCTGTCAACAATCAGCTTGGACTCA
CGCACAGATCTTCCGAAGGTGCGTTACGCCACTGCACTCGACTGGTTTCTTTTGATGAGC
TTCTTCTATTGTATCGCTACACTGCTTGAGTTTGCTGGTGTACACTATTTTACAAAGGTC
GGTTCCGGCGAAATAGTGATTGATGATTCAGAGTGGGAAGACTTGATCGAGGAGGTTGGT
GGTGACGCCTTCGCAGCGAGACAGCTGGCTGTGAGGAGACGAAGTTCCGCCAGATCTTCA
AATAACTTTAGTATGCCCGGCGTATCAGACAATGAAGGCGAAATGCAGGACCAGCAATCA
GTTCGTCTGACGATGGAGCGCACCACGCAGACAGAGGTGCGGGTGCCTCACTGGAGACAA
CTGCTGTACTGTCTAGCAGGAGACGATCAATATAGAAGGCAGCGGCAAAGAGAAGCTGGG
AACCGCGGCCACATCAACAGTGTGTCCCACATAGACCGGGCGGCCCGGGTCCTGTTCCCG
GCCTCATTCGCCCTCCTTAACCTCTTCTACTGGATGATCTACGCCTTCTCCAACGAGGAC
TTCGCGTGGAGCGACCATCCCATCAATACTCTCTCTCATTAG
Protein sequence:
MNTRENLRSHYVNQYGLEIANRIRRLEYLKTKKAKLLPSLNFLKRCRDHDIIPTCVKISP
KKDIKHSGRILHQASDFSVLQVSFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATS
DRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKV
GSGEIVIDDSEWEDLIEEVGGDAFAARQLAVRRRSSARSSNNFSMPGVSDNEGEMQDQQS
VRLTMERTTQTEVRVPHWRQLLYCLAGDDQYRRQRQREAGNRGHINSVSHIDRAARVLFP
ASFALLNLFYWMIYAFSNEDFAWSDHPINTLSH