| New model in OGS2.0 | DPOGS215849 |
|---|---|
| Genomic Position | scaffold56:+ 205875-207176 |
| See gene structure | |
| CDS Length | 1302 |
| Paired RNAseq reads | 69 |
| Single RNAseq reads | 219 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002949 (2e-178) |
| Best Drosophila hit | Cadherin-N, isoform F (1e-99) |
| Best Human hit | protocadherin Fat 4 precursor (1e-07) |
| Best NR hit (blastp) | predicted protein [Culex quinquefasciatus] (5e-107) |
| Best NR hit (blastx) | predicted protein [Culex quinquefasciatus] (1e-105) |
| GeneOntology terms | GO:0005911 cell-cell junction GO:0016021 integral to membrane GO:0007156 homophilic cell adhesion GO:0005886 plasma membrane GO:0016339 calcium-dependent cell-cell adhesion GO:0007413 axonal fasciculation GO:0050839 cell adhesion molecule binding GO:0004872 receptor activity GO:0005887 integral to plasma membrane GO:0007155 cell adhesion GO:0007412 axon target recognition GO:0008013 beta-catenin binding GO:0007411 axon guidance GO:0005509 calcium ion binding GO:0050774 negative regulation of dendrite morphogenesis GO:0048846 axon extension involved in axon guidance GO:0016318 ommatidial rotation GO:0031290 retinal ganglion cell axon guidance GO:0045467 R7 cell development GO:0045463 R8 cell development GO:0048841 regulation of axon extension involved in axon guidance GO:0048676 axon extension involved in development |
| InterPro families | IPR002126 Cadherin IPR015919 Cadherin-like |
| Orthology group | MCL24116 |
Nucleotide sequence:
ATGGCGCACCAAGTGGTGGTGGGAGGAGCTTTGCTCTTCTTATTATGTTTTGCTCTGAAT
ACAAGTTCACTCATCCTCTTGCCGCACGATGTCCGCCCTGGCCACGCTGTTCGACATTTT
ATTGGTAACCATTCGCGTTACACGCTACTTGATCCGGAATATGAACCTTTCTTTACATTA
CTCGACGATGGATTGCTTATGACAACAGCTGATCTCGGACCACTGTTGAATCAACCTCTA
AATCTCGCCATCTTAGAACAAACACCATTTAGCAGCTCGGCCCATACAATTCATCTATTA
GTTATGGATCGCAGAAAAATGCTCCATTTTTCTGATGTTAATGCCGTTCATGGTGAAATT
CCTGAAAATGCTCCACCAGGGTCAGTTGTAGATTGTTCTCCTATAAAAGCCACTGCTTTA
GTAAATGTTGGACCCATTGCTTATAAGATAACAAAAGGTAATGATCAATCTGTCTTCGCC
CTTCGTGAAAAATCGCGGCCTAGTAATTCCGATATCAAATCGGTAATAACAGATGGAGAC
GTAGAAATTGTTGCTATGAAACCATTGGACAGTGAAACTAAGAACCTTTACGATTTAGTA
ATTCAAGCGACTGATTTACACGGAGCAAATAAAGCTAGCCTTCCGGTTCGCGTCAACGTT
ATTAATGAGAACGATCATGAACCGATTTTTGAACAAGAAATATATTATTTCGCTGTTAAT
GGCACCTGTGATGATAATTGTCACAACGGCACGGCTTATTGGCAACGCTTTTCTACTATT
GGAAAAGTTCGCGCTTTTGACGCCGATGGTGATAGAGTATACTATTCACTAAAAGCCCCA
TCGAATCTTGCGGTAATTGTACCCCAAACTGGAGAATTAATACTGGCTGGTGAACCGGAT
GGACATGAGGCAGAGCTGGAAGTTTTGGCTCATGACGTAGGAATCCCGCCACGGAAAAGC
CAACCGGCGCAAGTTTTCATTGAATTTGTAATACGCGAACGAAAAGACATGCCCACACTG
CATCGTGAAAAGAGAAGAGTCACTCGAGCGGTTCGTCCTACTAAACGTATAGAATTCACC
GAGGCCGATGGCGAAGTTGAAGGGCGTGCGGTGTTTACTCTCGAAAAAGAAACCGACCGT
GAGACATTTAAAATAAGGGACGAAAATCCTTGGGTTACCGTTGAACCTAGTGGTGTAGTG
AAAGTTAAAAAGAAGTGGGACTATGAGGAGTTGGGACCTGAGAAGACTATTGATTTCTGG
GTCACTATCACGAACGCTGGGAATGGAGGTAAGGCATTTTAA
Protein sequence:
MAHQVVVGGALLFLLCFALNTSSLILLPHDVRPGHAVRHFIGNHSRYTLLDPEYEPFFTL
LDDGLLMTTADLGPLLNQPLNLAILEQTPFSSSAHTIHLLVMDRRKMLHFSDVNAVHGEI
PENAPPGSVVDCSPIKATALVNVGPIAYKITKGNDQSVFALREKSRPSNSDIKSVITDGD
VEIVAMKPLDSETKNLYDLVIQATDLHGANKASLPVRVNVINENDHEPIFEQEIYYFAVN
GTCDDNCHNGTAYWQRFSTIGKVRAFDADGDRVYYSLKAPSNLAVIVPQTGELILAGEPD
GHEAELEVLAHDVGIPPRKSQPAQVFIEFVIRERKDMPTLHREKRRVTRAVRPTKRIEFT
EADGEVEGRAVFTLEKETDRETFKIRDENPWVTVEPSGVVKVKKKWDYEELGPEKTIDFW
VTITNAGNGGKAF