| New model in OGS2.0 | DPOGS204170 |
|---|---|
| Genomic Position | scaffold3525:+ 2249-4622 |
| See gene structure | |
| CDS Length | 1017 |
| Paired RNAseq reads | 380 |
| Single RNAseq reads | 1028 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005107 (0.0) |
| Best Drosophila hit | spindle A, isoform A (6e-123) |
| Best Human hit | DNA repair protein RAD51 homolog 1 isoform 1 (3e-149) |
| Best NR hit (blastp) | Rad51 homolog [Bombyx mori] (0.0) |
| Best NR hit (blastx) | Rad51 homolog [Bombyx mori] (4e-170) |
| GeneOntology terms | GO:0005634 nucleus GO:0000724 double-strand break repair via homologous recombination GO:0008094 DNA-dependent ATPase activity GO:0017111 nucleoside-triphosphatase activity GO:0000793 condensed chromosome GO:0007126 meiosis GO:0000794 condensed nuclear chromosome GO:0006281 DNA repair GO:0000166 nucleotide binding GO:0005524 ATP binding GO:0003684 damaged DNA binding GO:0006268 DNA unwinding involved in replication GO:0000800 lateral element GO:0005515 protein binding |
| InterPro families | IPR016467 DNA recombination and repair protein, RecA-like IPR020588 DNA recombination/repair protein RecA/RadB, ATP-binding domain IPR020587 DNA recombination/repair protein RecA, monomer-monomer interface IPR013632 DNA recombination and repair protein Rad51, C-terminal IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical IPR011941 DNA recombination/repair protein Rad51 IPR003593 ATPase, AAA+ type, core |
| Orthology group | MCL12304 |
Nucleotide sequence:
ATGGCTACAACAGCATCTGCTGCCACGGCTACAATAGAGGAAGATTTGGACGAATGTGGA
CCACAGTTGATTACAAAATTAGAGGGTAATGGAATTACTTCAGGGGATATAAAAAAGTTA
GAAGAGGCTGGGTATCATACTGTTGAGTCTGTCGCATATGCTCCAAAGAAATGGTTAATA
ACAATAAAGGGCATCTCCGAAGCCAAAGCTGATAAAATACTGTCAGAAGCTTCAAAATTG
GTACCAATGGGATTTACAACAGCTACAGAGTTCCACCAGAAGAGGGCAGAAATTATACAG
TTGACAACGGGATCAAAAGAACTTGATAGACTACTTGGTGGTGGCATAGAAACAGGCTCA
ATCACTGAGATCTTTGGAGAGTTTCGGACAGGAAAAACACAGTTGTGTCATACTTTAGCT
GTGACTTGTCAGCTTCCGATTGAGCAATCTGGTGGAGAAGGGAAGTGTATGTACATAGAC
ACTGAAGGAACGTTCAGACCAGAACGATTACTGGCTGTGGCTCAGAGATATGGAATGGAA
AGTGCCGCAGTTCTCGATAATGTGGCGTATGCAAGGGCTTATAACACAGATCATCAAACC
CAGCTCTTAGTACAAGCGTGTGCTATGATGGCTGAATCTAGATACTCATTGCTGATAGTT
GATAGTGCGACAGCGCTTTACAGAACTGACTATTCTGGTAGAGGGGAATTGAATTCAAGA
CAATTACATCTCGGAAGATTTATGAGAATGTTACTCAGATTGGCCGATGAGTTCGGTGTA
GCTGTTATCATAACAAATCAAGTGGTGGCACAGGTCGATTCCGTTGGTGTGTTCAATGCT
GATACAAAGAAACCTATCGGGGGACATATTATAGCTCACGCATCGACCACAAGACTTTAT
CTCCGGAAGGGCAGAGGAGATAATAGAGTATGCAAGATATATGACAGCCCCTGTCTGCCG
GAAACGGAAGCCATGTTTGCTATCAGCACCGAAGGCATCACAGATGCTAAGGAATGA
Protein sequence:
MATTASAATATIEEDLDECGPQLITKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLI
TIKGISEAKADKILSEASKLVPMGFTTATEFHQKRAEIIQLTTGSKELDRLLGGGIETGS
ITEIFGEFRTGKTQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGME
SAAVLDNVAYARAYNTDHQTQLLVQACAMMAESRYSLLIVDSATALYRTDYSGRGELNSR
QLHLGRFMRMLLRLADEFGVAVIITNQVVAQVDSVGVFNADTKKPIGGHIIAHASTTRLY
LRKGRGDNRVCKIYDSPCLPETEAMFAISTEGITDAKE