| New model in OGS2.0 | DPOGS203877 |
|---|---|
| Genomic Position | scaffold5243:+ 13950-17096 |
| See gene structure | |
| CDS Length | 771 |
| Paired RNAseq reads | 31 |
| Single RNAseq reads | 108 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003821 (2e-93) |
| Best Drosophila hit | single-minded, isoform B (7e-96) |
| Best Human hit | single-minded homolog 1 (8e-94) |
| Best NR hit (blastp) | PREDICTED: similar to Single minded [Tribolium castaneum] (2e-108) |
| Best NR hit (blastx) | PREDICTED: similar to Single minded [Tribolium castaneum] (7e-104) |
| GeneOntology terms | GO:0007418 ventral midline development GO:0003702 RNA polymerase II transcription factor activity GO:0005634 nucleus GO:0003700 sequence-specific DNA binding transcription factor activity GO:0007417 central nervous system development GO:0007398 ectoderm development GO:0007628 adult walking behavior GO:0040011 locomotion GO:0007420 brain development GO:0007165 signal transduction GO:0006355 regulation of transcription, DNA-dependent GO:0004871 signal transducer activity GO:0007419 ventral cord development GO:0035225 determination of genital disc primordium GO:0016566 specific transcriptional repressor activity GO:0007409 axonogenesis GO:0043565 sequence-specific DNA binding GO:0016563 transcription activator activity GO:0007411 axon guidance |
| InterPro families | IPR000014 PAS IPR001092 Helix-loop-helix DNA-binding domain IPR013767 PAS fold IPR011598 Helix-loop-helix DNA-binding IPR001067 Nuclear translocator |
| Orthology group | MCL10901 |
Nucleotide sequence:
ATGAAGGAGAAGAGCAAGAACGCGGCACGTTCGAGGAGGGAGAAGGAAAACGCTGAGTTC
CTCGAACTAGCTAAACTGTTACCACTACCATCAGCCATCACCTCACAGCTGGACAAGGCG
TCGGTGATACGGCTCACCACAAGTTACCTGAAGATGAGGCAGGTCTTCCCTGATGGTCTG
GGAGACGCCTGGGGCGCCGCCCCTCCTCCACCACAGCCCAGGGAACTCTCAATACGAGAG
CTGGGATCCCATCTCCTGCAGACCCTCGATGGGTTTATATTCGTGGTGTCACCAGATGGA
AAGATTATGTACATAAGTGAGACGGCGTCCGTTCATCTCGGACTTAGTCAGGTGGAATTG
ACCGGGAACTCTATATACGAGTACATCCACCAAGCTGATCACGAGGAGATGTCCGCGGTG
CTCAGCCTTCAGCATCCGCACACGTATGCTGGACCGCCGGCCGTTGGGTATCCTGTAGGT
GGTACCTGGAGTCCCAACGTGGACGTGGAGTGTGAGAGAGCCTTCTTCATCAGGATGAAG
TGCGTCCTCGCTAAGAGGAACGCTGGCCTCACCACGTCAGGGTATAAGGTCATCCACTGT
TCTGGATACCTCCGCGCCCGCCGCTTCGGCGACGGCACGGCTCCTCTCGGGCTGGTCGCC
GTCGGCCACTCCCTCCCGCCGTCAGCCGTCACCGAGCTGAAGCTCCACTCCAACATGTTC
ATGTTCCGCGCCTCGCTGGACATGAGGCTCATCTTCCTGGACGCCAGGTGA
Protein sequence:
MKEKSKNAARSRREKENAEFLELAKLLPLPSAITSQLDKASVIRLTTSYLKMRQVFPDGL
GDAWGAAPPPPQPRELSIRELGSHLLQTLDGFIFVVSPDGKIMYISETASVHLGLSQVEL
TGNSIYEYIHQADHEEMSAVLSLQHPHTYAGPPAVGYPVGGTWSPNVDVECERAFFIRMK
CVLAKRNAGLTTSGYKVIHCSGYLRARRFGDGTAPLGLVAVGHSLPPSAVTELKLHSNMF
MFRASLDMRLIFLDAR