New model in OGS2.0 | DPOGS202373  |
---|---|
Genomic Position | scaffold14592:+ 3108-4992 |
See gene structure | |
CDS Length | 645 |
Paired RNAseq reads   | 97 |
Single RNAseq reads   | 365 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013896 (1e-94) |
Best Drosophila hit   | Ski6 (2e-67) |
Best Human hit | exosome complex exonuclease RRP41 (3e-61) |
Best NR hit (blastp)   | exosome complex exonuclease RRP41, putative [Aedes aegypti] (3e-82) |
Best NR hit (blastx)   | exosome complex exonuclease RRP41, putative [Aedes aegypti] (9e-79) |
GeneOntology terms    | GO:0000177 cytoplasmic exosome (RNase complex) GO:0000176 nuclear exosome (RNase complex) GO:0000175 3'-5'-exoribonuclease activity GO:0005700 polytene chromosome GO:0003723 RNA binding GO:0006396 RNA processing GO:0005737 cytoplasm GO:0005652 nuclear lamina |
InterPro families    | IPR001247 Exoribonuclease, phosphorolytic domain 1 IPR020568 Ribosomal protein S5 domain 2-type fold |
Orthology group | ND |
Nucleotide sequence:
ATGCCGGGACCCGATTTATTATCAAGCCAAGGGCTTCGGCTGGATGGTAGAAGACCTAAC
GAGCTTCGTCGGATCAGGTGTAAATTGGGAGTATTCACTCAACCAGACGGAAGCGCTTAT
TTAGAACAAGGAAATACGAAAGTTTTAGCGGCTGTATATGGCCCGCATCAGGCGTCCAAG
TCGAAGAGCTCAGCGGAAGGTGTAGTTGTGAATTGTCAGTATAGTATGGCTACATTTTCG
ACTGGTGAGAGGAAAAATCGCCCGCGGGGTGATCGTAAATCCCAAGAGATGTCAATGCAT
CTAAGACAGGCCCTCACAGCTGCTATTAAGACAGAAATGTACCCACGCTCACAGATTGAC
ATCTATGTTGAAGTGTTACAGGCAGATGGTGGGGCGTATTGCGCGAGTGTGAACGCCTCG
ACGCTGGCGTTGATAGACGCGGGTATACCTCTGAAGGCCTATGTGTGTTCGTGCTCGGCG
TCTATGGCGTGGTTGGACGGGGTGCCGGAGCCCCTACTCGACGTGGGCCACGTTGAGGAG
GCGGCCGGCGGCGTGACCTTGACAGTCGCGAGTCTACCTAGTACTGGTGAGTTAGAAATC
TGTTCGCGAACCCTTGTATTTGTATTTGATGTATGGTTTTGGTAA
Protein sequence:
MPGPDLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK
SKSSAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQID
IYVEVLQADGGAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEE
AAGGVTLTVASLPSTGELEICSRTLVFVFDVWFW