| New model in OGS2.0 | DPOGS200427 |
|---|---|
| Genomic Position | scaffold1563:- 24307-32837 |
| See gene structure | |
| CDS Length | 1968 |
| Paired RNAseq reads | 7368 |
| Single RNAseq reads | 20367 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009000 (0.0) |
| Best Drosophila hit | succinyl coenzyme A synthetase flavoprotein subunit, isoform C (0.0) |
| Best Human hit | succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (0.0) |
| Best NR hit (blastp) | GH22974 [Drosophila grimshawi] (0.0) |
| Best NR hit (blastx) | AGAP010429-PA [Anopheles gambiae str. PEST] (0.0) |
| GeneOntology terms | GO:0008177 succinate dehydrogenase (ubiquinone) activity GO:0005749 mitochondrial respiratory chain complex II GO:0004776 succinate-CoA ligase (GDP-forming) activity GO:0006099 tricarboxylic acid cycle GO:0009055 electron carrier activity GO:0050660 FAD binding GO:0022900 electron transport chain |
| InterPro families | IPR011281 Succinate dehydrogenase, flavoprotein subunit IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit IPR003953 Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal IPR004112 Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal |
| Orthology group | MCL10405 |
Nucleotide sequence:
ATGAGTGCATTGATTAAGGCCGCAGTTTCCCGCAGCCCGTCATGTTTGGCGACATATTTA
AACAGGAACCTCCACCTAACAGTGGGAGCGTCAGCATCGAAAGACGCTTCTGTGAATTCG
AACGCAAGTAAATCGTACACGGTTATCGATCACAAGCACGATGCCTTAGTTATTGGGGCT
GGAGGAGCTGGTTTAAGAGCCGCCTTTGGTTTGGTACAGGAGGGATTCAAAACTGCTGTT
GTAACAAAGCTATTCCCTACCAGATCCCATACTGTTGCTGCACAGGGAGGCATCAATGCT
GCATTAGGTAATATGGAAGAAGATAATTGGTTGTGGCACATGTATGATACTGTCAAGGGA
TCTGACTGGCTCGGAGACCAGGACGCCATCCATTACATGACGAAGGAAGCACCTCATGCT
GTTATTGAGTTAGACAACTATGGCATGCCTTTTTCGCGCACACCAGAAGGTAGAATATAC
CAGAGGGCCTTCGGTGGTCAGTCACTCAAGTTTGGTAAAGGGGGTCAAGCTCATAGATGC
TGCGCTGTAGCCGACAGAACGGGCCATTCACTTCTCCATACACTCTACGGCCAATCCCTC
CGATATGACTGTGAATACTTCATTGAGTATTTTGCTCTGGATCTCCTGATGGAAGACGGA
GTCTGCAAGGGATGTATCGCTATTAACCTTGAGGACGGAACTTTACATAGGTTCCAAGCT
AAGAACACTATCCTCGCCACGGGTGGCACTGGGCGGTCGTACTTCAGCTGCACCTCGGCT
CACACGTGCACTGGGGACGGAACAGCCATGGCGGCTCGAGCTGGTCTCCAGAACGAGGAC
ATGGAGTTTGTGCAGTTCCACCCCACCGGTATCTACGGAGCTGGTTGTCTAATGACCGAA
GGTTGTCGTGGTGAAGGCGGTTTCCTTGTGAACGCTAAGGGCGAGCGGTTCATGGAAAGA
TATGCACCGGTCGCCAAAGACCTCGCCAGCAGGGACGTGGTCTCCAGAGCCATGACCGTG
GAGATCATGGAAGGTCGCGGCTGCGGTCCAGAAAAGGACCACGTCCACCTTCAGCTGCAC
CATCTGCCTCCGGAACAGCTGAAGCAGCGTCTCCCCGGCATCTCGGAGACGGCCATGATC
TTCGCCGGAGTCGACGTCACCAAGGAACCCATACCTGTGTTGCCCACCGTACACTACAAC
ATGGGCGGAACGCCGACCAACTTCAGGGGAGAGGTTATAACGCATTACAACGGCGAAGAC
CGCGTGGTCCCTGGTCTACTGGCAGCTGGTGAGGCTTCCTGTGCCTCCGTCCATGGTGCA
AACAGATTGGGGGCGAACTCCCTCCTTGATATCGTTGTGTTTGGAAGAGCCTGCGCCCTC
ACAGTCGCAGACACCAGCCGCCCTGGGGACAAGCAGGAGCCGCTCAAAGACACCACTGGT
CAGGAAAGTATCGGTAATCTGGACAAGTTAAGGTACGCGAACGGCAGCATCTCCACCGCG
GAGCTGCGCCTGCGCATGCAGAAATGTATGCAGAAGAACGCGGCCGTGTTCAGACAGAAG
AGCACACTAGAAGAAGGTCAACGCCAGATCCACGAGGTGTACAAGCAGATGGCGGACGTG
AAGGTTTCAGATCGCTCACTGATCTGGAACAGCGACCTGGTGGAGACCCTGGAGCTGCAG
AACCTGCTCATCAACGCGGTCCAGATCGTGGAGGGCGCGCTGGCCAGGGAGGAGTCCCGA
GGAGCGCACGCCCGGGAGGACTTCAAGACCAGGAGGGACGAGTACGACTACTCCAAGCCA
CTCGAGGGACAGACAAAATTGCCGTTCGAGAAGCACTGGCGCAAGCATACATTGTCGGAG
ACCAACGCGGCCACCGGCGAGACCAAACTCAGCTACAGACCGGTCATAGACCACACGCTC
GACCAGGCCGAGTGCCAGACCGTGCCGCCCGTCATACGCACATACTAG
Protein sequence:
MSALIKAAVSRSPSCLATYLNRNLHLTVGASASKDASVNSNASKSYTVIDHKHDALVIGA
GGAGLRAAFGLVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDNWLWHMYDTVKG
SDWLGDQDAIHYMTKEAPHAVIELDNYGMPFSRTPEGRIYQRAFGGQSLKFGKGGQAHRC
CAVADRTGHSLLHTLYGQSLRYDCEYFIEYFALDLLMEDGVCKGCIAINLEDGTLHRFQA
KNTILATGGTGRSYFSCTSAHTCTGDGTAMAARAGLQNEDMEFVQFHPTGIYGAGCLMTE
GCRGEGGFLVNAKGERFMERYAPVAKDLASRDVVSRAMTVEIMEGRGCGPEKDHVHLQLH
HLPPEQLKQRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGTPTNFRGEVITHYNGED
RVVPGLLAAGEASCASVHGANRLGANSLLDIVVFGRACALTVADTSRPGDKQEPLKDTTG
QESIGNLDKLRYANGSISTAELRLRMQKCMQKNAAVFRQKSTLEEGQRQIHEVYKQMADV
KVSDRSLIWNSDLVETLELQNLLINAVQIVEGALAREESRGAHAREDFKTRRDEYDYSKP
LEGQTKLPFEKHWRKHTLSETNAATGETKLSYRPVIDHTLDQAECQTVPPVIRTY