| New model in OGS2.0 | DPOGS200432 |
|---|---|
| Genomic Position | scaffold1563:+ 33819-35906 |
| See gene structure | |
| CDS Length | 927 |
| Paired RNAseq reads | 286 |
| Single RNAseq reads | 946 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008893 (8e-51) |
| Best Drosophila hit | TBP-associated factor 11 (3e-27) |
| Best Human hit | transcription initiation factor TFIID subunit 11 (4e-25) |
| Best NR hit (blastp) | transcription initiation factor TFIID subunit 11 [Culex quinquefasciatus] (1e-43) |
| Best NR hit (blastx) | PREDICTED: similar to Transcription initiation factor TFIID subunit 11 (Transcription initiation factor TFIID 28 kDa subunit beta) (p28-beta) (TAFII30 beta) [Tribolium castaneum] (2e-28) |
| GeneOntology terms | GO:0005634 nucleus GO:0006355 regulation of transcription, DNA-dependent GO:0016251 general RNA polymerase II transcription factor activity GO:0006367 transcription initiation from RNA polymerase II promoter GO:0005669 transcription factor TFIID complex GO:0003677 DNA binding |
| InterPro families | IPR006809 TAFII28-like protein IPR009072 Histone-fold |
| Orthology group | MCL13059 |
Nucleotide sequence:
ATGGCTGATAATCCAAGCAGCGACGGTTTATCCGAAGCGGAAAGATTAAAAGAAGAGGAA
TTGGCTCAAGAACTGGACCACAGTGATTTTAACGAAGACGACTCTCAGGAAATATCCTTA
GAAATAGAAGAGAAACTGTTGAAAGATGAACCAGAATACACAACGTTAGTCAACTATGGT
GAGAGTATACAAAGTGAACAGAGTATCACAACAGAGCATTTCAATGATAACTTAGATAAA
GGACTAGACTCTGAGGGTCTTGGTAATATATACACTGAAACCACTGACATGTTTATAACA
CAATCGGATCTCAGTGATCCAAATGATCAGTATGGATCATACATTAATGATTATTCCTTT
GATAACTCGCAAACAATTGAGGAGAGCCATTCACAGAGTATAGGAGAATATTCTACAAGT
AAGGATGCTAGTGTGATGCCAAACATGGGAGAATTCCAGCAAAGTGAAAATTCAAATGGT
GACTATCAAACTGCGGAAGATCTGAGCGAAAGAGAAAGAGAGAAGAAAACAAAGAAGGAA
TTAGAAGAAGAGGAAAGAGAGAAGATGCAAGTTTTAGTGTCAAACTTTACTGAAGAACAA
CTAGGAAGGTATGAAATGTATAGACGAGCAGCGTTTCCTAAGGCGGCTGTAAAACGTTTG
ATGCAGACTATCACGGGATGTTCAGTCGGACAGAATGTTGTGATAGCTATGTCTGGTATC
GCCAAGGTGTTTGTTGGTGAAGTCGTTGAGGAAGCATTAGAGGTATTGGAAAAATCTGGA
AGATGTCTCTTATCGAATCTCCATAACCTTTTTAGACCGGAGCCAGGTCCATTACAGCCA
AAGCATCTCCGGGAAGCATTGCGTAGGCTAAGAGTAAGGGGTGCCATATCAGCAAGAAAA
GCTTATAGGGGATCTTTCAGATTGTAA
Protein sequence:
MADNPSSDGLSEAERLKEEELAQELDHSDFNEDDSQEISLEIEEKLLKDEPEYTTLVNYG
ESIQSEQSITTEHFNDNLDKGLDSEGLGNIYTETTDMFITQSDLSDPNDQYGSYINDYSF
DNSQTIEESHSQSIGEYSTSKDASVMPNMGEFQQSENSNGDYQTAEDLSEREREKKTKKE
LEEEEREKMQVLVSNFTEEQLGRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGI
AKVFVGEVVEEALEVLEKSGRCLLSNLHNLFRPEPGPLQPKHLREALRRLRVRGAISARK
AYRGSFRL