| New model in OGS2.0 | DPOGS200701 |
|---|---|
| Genomic Position | scaffold4945:+ 540-2893 |
| See gene structure | |
| CDS Length | 780 |
| Paired RNAseq reads | 261 |
| Single RNAseq reads | 799 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005282 (2e-70) |
| Best Drosophila hit | spliceosomal protein on the X (6e-98) |
| Best Human hit | splicing factor 3B subunit 4 (3e-96) |
| Best NR hit (blastp) | spliceosomal protein on the X [Bombyx mori] (2e-109) |
| Best NR hit (blastx) | spliceosomal protein on the X [Bombyx mori] (4e-106) |
| GeneOntology terms | GO:0005515 protein binding GO:0005634 nucleus GO:0006397 mRNA processing GO:0003723 RNA binding GO:0000375 RNA splicing, via transesterification reactions GO:0008380 RNA splicing GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0000166 nucleotide binding |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | ND |
Nucleotide sequence:
ATGGCTGCAGGACCAATTGCAGAAAGAAATCAAGATGCAACGATTTACGTTGGTGGTTTG
GACGACAGAGTCACAGAAAGCCTGCTTTGGGAACTATTTGTTCAAGCTGGACCTGTCGTG
AATGTTCATATGCCAAAGGACCGAGTGACACAAACTCATCAAGGATATGGATTTGTTGAA
TTTATGGGAGAAGAAGATGCCGATTATGCAATAAAGGTCATGAATATGATAAAACTATAT
GGAAAGCCCGTAAGGGTAAATAAAGCGTCTGCACACCAGAAGAACCTTGATGTGGGAGCT
AATGTGTTCATTGGTAATCTTGATCCCGAGGTAGATGAAAAACTATTGTATGATACATTC
TCTGCATTCGGTGTCATATTGCAGACACCTAAGGTTATGAGAGACCCCGAGACTGGTAAC
TCAAAAGCATTTGCATTTATAAACTTTGCATCCTTCGAAGCCTCCGATGCGGCCATAGAG
GCTATGAATAACCAGTACTTGTGCAACCGTCCTATATCTGTCTCTTATGCATTTAAGAAA
GATGTTAAGGGAGAAAGGCATGGTTCCGCAGCTGAAAGACAATCAACAATAATTTCTTCA
TTTCATCATTTCCCCCCTCCTCCATTTGGGCCCCCTGGCTTTGGCCCACCACCCCCTCCT
GGAGCGAGGCCCCCACCATGGAGGCCACCTCCACCGTCTTTCAGGCCCCAATACCGACCG
CCACCGTTTGGTCATCCCCCCTTCCCGCACCACCCGCCTGAACCAAACTATAACTATTAA
Protein sequence:
MAAGPIAERNQDATIYVGGLDDRVTESLLWELFVQAGPVVNVHMPKDRVTQTHQGYGFVE
FMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTF
SAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKK
DVKGERHGSAAERQSTIISSFHHFPPPPFGPPGFGPPPPPGARPPPWRPPPPSFRPQYRP
PPFGHPPFPHHPPEPNYNY