| New model in OGS2.0 | DPOGS201034 |
|---|---|
| Genomic Position | scaffold1815:+ 8579-9214 |
| See gene structure | |
| CDS Length | 636 |
| Paired RNAseq reads | 600 |
| Single RNAseq reads | 1473 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009114 (3e-101) |
| Best Drosophila hit | CG12343 (1e-70) |
| Best Human hit | pre-mRNA-splicing factor SYF2 isoform 1 (3e-55) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP010515-PA [Tribolium castaneum] (1e-86) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP010515-PA [Tribolium castaneum] (3e-83) |
| GeneOntology terms | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071004 U2-type prespliceosome GO:0071006 U2-type catalytic step 1 spliceosome GO:0071007 U2-type catalytic step 2 spliceosome GO:0071008 U2-type post-mRNA release spliceosomal complex |
| InterPro families | IPR013260 mRNA splicing factor SYF2 |
| Orthology group | MCL12760 |
Nucleotide sequence:
ATGAAAAGGTTGCGTTCATTACACTCAGCTAGGAACGAAGCTCGAACACATAATCACCAG
GAAGTAGTAGCAGAAGAAGCTCGAAATAAACTTCCCGTCAATTATGAAGCTAAAAAACGA
CAAGCGGAATGGCTTTTAGAAGATCAAAACAAGCGGGAGGAAGCGACGAAACAAGGCAAG
GATTACGATAGAGTCAAACTACTTAACATATCTGCGGTTGAGGCAGAGAGATTGGAAAGA
AAGAAGAAGAAGAAAAATCCAGACCAAGGGTTTTCCAGTTACGAACAGGCCACTGTCCGA
CAATACAACCGTTTGATAAAGAACATGCCGACCATGGATAACGAGGAATACGAAAAACAG
AAACAGAAATACGGTGAAGCATTTTACGGAGGGCCCAATGTTATTATACATGGCATGCAC
GAGGACCGCAAGGAAGCAGTCGATAAAATGGTGAACGATTTAGAGGGACAGATAGCCAAG
AGATCGAAATACTCGAGAAGACGTATTCATAATGATGATGCAGATATCGACTACATCAAT
GAACGTAATGCCAAGTTCAATAAGAAATTAGAGAGATTCTATGGAGAACACACAGCTGAA
ATCAAACAGAACCTCGAAAGGGGTACTGCAATATAA
Protein sequence:
MKRLRSLHSARNEARTHNHQEVVAEEARNKLPVNYEAKKRQAEWLLEDQNKREEATKQGK
DYDRVKLLNISAVEAERLERKKKKKNPDQGFSSYEQATVRQYNRLIKNMPTMDNEEYEKQ
KQKYGEAFYGGPNVIIHGMHEDRKEAVDKMVNDLEGQIAKRSKYSRRRIHNDDADIDYIN
ERNAKFNKKLERFYGEHTAEIKQNLERGTAI