| Genomic Position | scaffold191:- 68223-69170 |
|---|---|
| See gene structure | |
| CDS Length | 948 |
| Paired RNAseq reads | 148 |
| Single RNAseq reads | 384 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007809 (9e-70) |
| Best Drosophila hit | nicotinic acetylcholine receptor beta 21C, isoform A (3e-09) |
| Best Human hit | neuronal acetylcholine receptor subunit beta-2 precursor (2e-09) |
| Best NR hit (blastp) | nicotinic acetylcholine receptor subunit alpha 9 [Bombyx mori] (8e-76) |
| Best NR hit (blastx) | nicotinic acetylcholine receptor subunit alpha 9 [Bombyx mori] (8e-72) |
| GeneOntology terms | GO:0016021 integral to membrane GO:0001661 conditioned taste aversion GO:0001666 response to hypoxia GO:0005515 protein binding GO:0005892 nicotinic acetylcholine-gated receptor-channel complex GO:0021562 vestibulocochlear nerve development GO:0035095 behavioral response to nicotine GO:0005886 plasma membrane GO:0006939 smooth muscle contraction GO:0007613 memory GO:0008542 visual learning GO:0009897 external side of plasma membrane GO:0021952 central nervous system projection neuron axonogenesis GO:0045188 regulation of circadian sleep/wake cycle, non-REM sleep GO:0004872 receptor activity GO:0006816 calcium ion transport GO:0007605 sensory perception of sound GO:0035176 social behavior GO:0007601 visual perception GO:0015464 acetylcholine receptor activity GO:0042113 B cell activation GO:0042320 regulation of circadian sleep/wake cycle, REM sleep GO:0045759 negative regulation of action potential GO:0051963 regulation of synaptogenesis GO:0019233 sensory perception of pain GO:0021771 lateral geniculate nucleus development GO:0032226 positive regulation of synaptic transmission, dopaminergic GO:0042220 response to cocaine GO:0045471 response to ethanol GO:0048814 regulation of dendrite morphogenesis GO:0005230 extracellular ligand-gated ion channel activity GO:0006811 ion transport GO:0030054 cell junction GO:0004889 nicotinic acetylcholine-activated cation-selective channel activity GO:0007626 locomotory behavior GO:0005216 ion channel activity GO:0045202 synapse GO:0045211 postsynaptic membrane GO:0050890 cognition GO:0051899 membrane depolarization GO:0060084 synaptic transmission involved in micturition GO:0007165 signal transduction GO:0033603 positive regulation of dopamine secretion GO:0042053 regulation of dopamine metabolic process GO:0021631 optic nerve morphogenesis |
| InterPro families | IPR006202 Neurotransmitter-gated ion-channel ligand-binding |
| Orthology group | ND |
Nucleotide sequence:
ATGCAAGTTAAAAGTTATGACATTTGGTCACCTCGGATGATGCTCATGAACCCAGACGCC
ACTTACTACAATTACGATAAAATTTATACGATTTGTGTATTGGCGTACGATGGTATAGTA
ACATGTGTACCGAGGACAGTATACAAAGCGACATGTCAGTCGCAACTTACAAACTGGCCA
TACGACGAACAAAGTTGTACTATATATTTAGGTTCTTGGATGAATAAAGAAGAACAAGTG
AATTTGACATTTTATGAAAATGATCCAATAATATTGGATGATTTTCAAACCGCTCCAGGG
TGGAAACTTTTAAAAGTGGTCCATTATCGTGTACCGGGTGAGCAGCAAAAAATTTATAAT
TCAAATAAAAGTCAACCAACCTTAAAGTTAACGTTTTTATTACGTCGTGAAGCTGCTGGG
TTAGCGATCCTTATAATTGTTCCACCTACAGTTTTAGTATTGCTAATGCTTTCATTCCTT
GTTATGAAAGTTAGAGATAATAGTCGATTATGGTTGTTGAGCTTCATTTTGTTTAATCAT
TTTGCTGTTATCATTACTATAGGTTTTGTTGTGCCTCGACTGAGTTTGGACACACCATTT
ATATTGTTTTTTATTCGTGATTCAATGATTATGACATTAGTAAGTATTTTGGAGACCTTA
TTGCTCATGTCCTTGACAAGAAGAATCCTACCAGCTCCTATTTGGATAACTTCTGTGAAT
CGTCTTGTTACTAGAGGAATAGGAAAGTATTTAATATTTAGTGAGCTAGAACTTTGTGAA
GACCTACAAGAAAATCTGATTTCAGAAGAAGGTACTACAAATACAGATTTGAATCCGCGA
TTCAATTTGGACTGGATTAAGTTTGCCAATTTAATCAACAGTTTCTTCGTTATATTATCT
ATACTATTTTATATAATTATTATGTGCAAATATATTCCGCGTTATTAA
Protein sequence:
MQVKSYDIWSPRMMLMNPDATYYNYDKIYTICVLAYDGIVTCVPRTVYKATCQSQLTNWP
YDEQSCTIYLGSWMNKEEQVNLTFYENDPIILDDFQTAPGWKLLKVVHYRVPGEQQKIYN
SNKSQPTLKLTFLLRREAAGLAILIIVPPTVLVLLMLSFLVMKVRDNSRLWLLSFILFNH
FAVIITIGFVVPRLSLDTPFILFFIRDSMIMTLVSILETLLLMSLTRRILPAPIWITSVN
RLVTRGIGKYLIFSELELCEDLQENLISEEGTTNTDLNPRFNLDWIKFANLINSFFVILS
ILFYIIIMCKYIPRY