| New model in OGS2.0 | DPOGS204134 |
|---|---|
| Genomic Position | scaffold731:- 1576-14390 |
| See gene structure | |
| CDS Length | 4974 |
| Paired RNAseq reads | 934 |
| Single RNAseq reads | 2150 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013616 (1e-08) |
| Best Drosophila hit | Cad88C (6e-25) |
| Best Human hit | protocadherin Fat 4 precursor (4e-18) |
| Best NR hit (blastp) | cadherin-like membrane protein [Bombyx mori] (0.0) |
| Best NR hit (blastx) | cadherin-like membrane protein [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0005887 integral to plasma membrane GO:0016339 calcium-dependent cell-cell adhesion GO:0007156 homophilic cell adhesion GO:0005886 plasma membrane GO:0005509 calcium ion binding GO:0007424 open tracheal system development |
| InterPro families | IPR002126 Cadherin IPR020894 Cadherin conserved site IPR015919 Cadherin-like |
| Orthology group | MCL20421 |
Nucleotide sequence:
ATGACCAACATTCCAAGGGAATCCAGGCCTGATGACTTACCGGAACTTGTAGCGGAAGGA
GATACATGGAGCGACAGACCTTTCCTGCCCGGTACTGAGGGTGAAGAAGTTTGTTTTGAA
CAATATAGAGCAAATGTCAACATTCAAGTAATATTTATGGATGAAGAGAACGTGGGAGAA
GTACCCATAGCGAAACTGAATTATCAAGGAGATAAGACACCCACTATTGTTCTTCCCCTC
ACTGCTGGATCTTTCAATTTGTTGCGACCAGAATTGAAAAAAGAAAATAATTCTTGGTTT
CTTTACGTGACTCAAAGACAGGACTATGAAACGTTAGAAAGTGCTTTATATATCCTGAGA
ATACAGATAGAAAATGAAGTGTTGGAAGGACAAATATCTCTATGGATTGTAAACATTGAC
GACAATCCTCCTATCATACACTTGCTGGATGCCTGCGTCGTGCCGGAACTAGGAGATCCT
CGTTTGACAAATTGTACATACGAGGTAACAGACATAGATGGTAGAATCAGTACCAGCAAC
ATGACCTTCAAGATTGGTAGCGATCGTGATGATGAAAATTTTTTCTATTTTATCGGAGAA
CCTGATACAAGCAACTGGAACAGAATGACCACGACTCTTGGAATAAATAGAGCACTAGAT
TTTGAAGCCAGCGCCCTTCATATATTTACAGTTACAGCACTCGATTCTTTAAATAACAAC
CACACCGTCACGATGATGGTCCAAGTGCAGAACGTTGAACATCGTATGCCTCGTTGGGTA
GTTATATTCGCGGTGCAACAAATCGACGAGCTGAAGGCTGGGAATTTTAATGTTAGGGCA
ATAGATGGCGACACTGGTATCAACAAGCGGATTTTATACAAAATAGAAACGGAAAGAGGT
GAAGAAAACCTATTTGACATTACAAATATAGAAGGTGGCTATAGCGGAGGAATTTTTCAA
ATTAATCCAATCGACAGAGACGCATTAGAAAAAGAACTATTTCAAGTTACTCTGACAGCG
TACAAATATGATAACGAGACGTTCTCTACGTCAACCAACGTAGTTATAAGGGTCAATGAC
ATAAATAACAAGAAACCAGAACCCCTACACTCTGAATACAACATCGCCATAGCCGAGGAA
ACACCTCAAACATTATATTTCGACAAGGAATTTGGATTTCACGATAGAGATTTGGGTCCG
AATGCTCGATATACAGTCCACTTAGAGAGCGTCTACCCTGACGGCGTCGCTGATGCTTTC
TTTATACAGCCGGAGACAGGGTATCAGAGACAAATCTTCATTATGGGCACCTCAAATCAC
AGTATGCTGGACTTTGAAGTGGAAGAATTTCAACATATACAAATTAAGGTAGTAGCCACC
GACATAGATAAACCCGATTTTATAGGTGTAGCGATTGTAAACATCAATTTAACTAACTGG
AACGACGAGTTACCTATCTTTAGTGAAGGCAATCAGATCGTGTCGTTCAATGAGACTGAG
GGCGAAGGGTTCAGGGTGGCTCAAGTTCTGGCTCGGGACAGAGATATCGGCGACAGGGTT
ATCCACAGTGTCTTGGGTAATGCACAAAACTTTCTAAGAATAGATAATGAAACAGGAGAA
ATCTTCGTCTCTAAGAATAATAGTTTTGATTATCAGAGACAAAGCGAAATATTTGTTCAG
GTGCTAGCCGAGGACACATTGGGCGAGCCGTACAACACTGCCACATCACAGCTCGTTATA
CGACTGAAGGACATAAATAACACACCACCGAGCTTGAGACTACCTCGGGGGAGCACACAA
GTACAGGAGAACGTGCCAGCGGGTTACGTTATAAACGATCAGCCTGAGCAGTTCATAACA
GCGACTGACCCCGACACCACCGCCAACCTGACCTTCCTGATCATATGGGAGACATCCTAC
GCTATGAAACGAGGCACGGAGACTGACAAGGACGAGATCGAAGGGTGCTTGGATATAGTC
ACGTCATATGTGAACGATAATAAAGGCCAGGCAGTCGGTCGCCTGGTGGTGAAGGAGATA
AGGCCCAATGTGACCATAGACTACGAGAAGTTCGAGGTGTTGTACCTGACGGTGAGGGTT
GTGGATACCGAGACGGAAATTGGAGAACCTTATGACGAATTAACTTTCACGATCACGATT
CTGGACATGAACGACAACCCACCCGTGTGGGTGAACGGTACCTTGGAACAGACCCTCAGG
GTACGGGAAAAGTCAGGAGCCGGCACCATTATAGGTACCGTTACAGCCACTGATGCAGAC
GGCCCACAGTATAACCAAGTTAGATATACCATTGTTCCCAGAGAAGATACGCCAGAAGAC
TTGGTGAAGATCGACTTCGACTCTGGTCAGCTGGCTGTGGACAGATCTGGTGCCATCGAC
GCTGACGAGCCGAGAGACAAGCTGTACTACACCATCCTGGCCAGCGATAGATGCTCCCAA
CCAGATAACACCACCTGCGGACCTGACTCCACTTACTTTATTACGGAGGGCAAGGTAACG
ATACAAATTATTGACACCAACGATCAAATTCCAAGGGCCAGAACCGACAGATACAATACC
ACGGTTTATATACACGAGAACGCTGAACCTGGGAAGGAAGTGGTCACTCTAGTAGCTGAA
GACGGCGACAGAGATGTTATGTACAACACCATACGCTATCAAATCAATTACGGTGTGAAT
ATGCGTCTCAATGACTTCTTTGCCATCGAACCTGAGTCCGGTCGTGTCTACGTTCACTAC
ACCACCCACGAAGTCCTCGACAGAGACGGCAACGAACCAACACACAGGATATTCTTTACA
TTGATTGATAACTTCAATTTTCAAGGAGACGGAAATCGCAACCAAAATACGACAGACATT
GAGGTGATATTGTTGGATGTCAATGATAACGCACCGCAGCTGCCATTGCCTAATTTTATT
TGGTCTATATCAGAGAATGCGCAGCAGGGTATAAGACTTAACCCTGGCATATTTGCCGAG
GACCGAGACGAACCCAACACGGACAACTCCCGAGTTGGTTACGAGATCACCAACTTGACT
CTCACAAACAGAGACATCACTCCACCAGAACTCTTCACCGTCATGCACGTCTTTATATCT
GATAATATTTACAACGTTTCCGCTGAATTAGAAGTAGTAAGACATTTGAAAGGATTTTGG
GGAAATTATGACATTGGTATCCGTGCCTTCGATCATGGCGTCCCTCGAATGGAATCCAGC
GAAATTTACCAAATCACTATAATACCATACAATTTCGAATCACCCAAGTTTAAATTCCCA
TTAGACGCCGCTACTCTAAGATTTTCAAAGGAACGTGCGCTAGTGAACAGTGTTTTAGTA
CTGGCCACCGGTGAGCTATTGGAACGAGTCAGTGCCTCTGATTCTGACGGATTGCAGGCT
GGAGAAGTCACCTTCGAGGTGGTGGGAGATGAGCTAGCCAGTGAGCACTTCCGGATATTG
AACAACGGGGATAACATAGGAACGCTTTTATTGACGCAACCGCTACCAACAGACCAGCAG
ATTATACAGTTTGAGCTTAAATTGAGAGCTACAGACGGAGGATTGGACCCCGGACCCCTC
TCCAGCGAAGTAACCGTCAAAGCGGTTTTCGTGCCAACTCAAGGAGAACCAATATTCCCA
TCGTCCACGGCAAGCGTCGCTTTTGTTGAGAAGGAAGTGGGGCTAACCGAAAGACAACAA
CTGCCACTGGCCGAGGATCCGAAGAACCATCTATGTGACAAAGATTGCAGGGATATTTAC
TACGCTATCATCAGTGGCAACAACGACGGTATCTTTGCACTGGATCCTGTAACCAACGTG
CTCACTCTGAACAAAGCGCTCAATCGTTCGGAGAGCGAATCACACGTATTACGAGTGGCC
ACCAGTAACGAAAAAAATATTTCACCATCTTTGGCTACATCCGCGACGCATTCAGACGGG
GCGCAAATCACTTACTCAATAGATTTTTCCTCCATGCAAGTCGATCCAAGCCTCAACAAT
GTACGGAACACCGCATTCATCCTTAACTCTAACTCTGGGTTAATGACCCTCAATATACAG
CCAACAGCCAGCATGCAGGGAATGTTTGAGTTTAACGTACTCGCGACTGATCCACAGGAA
GCGTTCGACACATCGGCTGTAAAGATCTATGTCGTGTCATCGCGGAACAGAGTCTCATTT
CTATTCCTCAACATGCTCCAACAGATAGAGCAAATGACAGACTTTATAGCGTCAACCTTC
ACTTCTGGCTTTAATATGACATGTAACATTGACCAAGTGTTGCCGGCGACGGATGAGGCA
GGATCTACCAGGGACAACGTCACTGAAGTACGCGCACACTTCATAAAAGATGACGTACCT
GCTGAGGCTAGCGTCATTGAGGCGCTCCGCGGGGACATATCGCGTCTGCGTTTGATCCAA
GGAACGTTGATCTCCAAAGAGTTGGTGCTGCAAGACCTGGTGACAGACATCAGCCCCTCA
GAGCTGGCGGATGGACGTGCTCTGCTTTACACCTTAGCAGCAGTAGCCGGTGTGATGACG
ATTCTTCTACTGGTCACTATTGTGGTCTACTTCTGGAGGACCAGAGTACTCAACCGTCGC
CTGCAAGCGCTGTCGATGACCAAGTACGGCTCCCAGGACTCTGGACTGAATCGTTTGGGT
CTAGCGGCGCCGGGAACTAATAAACATGCGGTGGAAGGATCCAACCCCATATGGAATGAA
TCTATCAAGGCGCCCGACTTCGATGCCCTCAGTGAGACGTCTGATGATTCCGATCTAATC
GGTATCGAGAATCTGGAACAGTTCCGAGACGACTACTTCCCCCCGGTTGGTTCGGACTCG
GCGGAGGGAGTTACAAACACAGAGCCGGTGTCGACGCATCTTAATAATTTTGGATTCAAC
CCTACCCCCTTCACCCCCGAGTTCGCTAACAAACCGCGACAATATAAGATTTGA
Protein sequence:
MTNIPRESRPDDLPELVAEGDTWSDRPFLPGTEGEEVCFEQYRANVNIQVIFMDEENVGE
VPIAKLNYQGDKTPTIVLPLTAGSFNLLRPELKKENNSWFLYVTQRQDYETLESALYILR
IQIENEVLEGQISLWIVNIDDNPPIIHLLDACVVPELGDPRLTNCTYEVTDIDGRISTSN
MTFKIGSDRDDENFFYFIGEPDTSNWNRMTTTLGINRALDFEASALHIFTVTALDSLNNN
HTVTMMVQVQNVEHRMPRWVVIFAVQQIDELKAGNFNVRAIDGDTGINKRILYKIETERG
EENLFDITNIEGGYSGGIFQINPIDRDALEKELFQVTLTAYKYDNETFSTSTNVVIRVND
INNKKPEPLHSEYNIAIAEETPQTLYFDKEFGFHDRDLGPNARYTVHLESVYPDGVADAF
FIQPETGYQRQIFIMGTSNHSMLDFEVEEFQHIQIKVVATDIDKPDFIGVAIVNINLTNW
NDELPIFSEGNQIVSFNETEGEGFRVAQVLARDRDIGDRVIHSVLGNAQNFLRIDNETGE
IFVSKNNSFDYQRQSEIFVQVLAEDTLGEPYNTATSQLVIRLKDINNTPPSLRLPRGSTQ
VQENVPAGYVINDQPEQFITATDPDTTANLTFLIIWETSYAMKRGTETDKDEIEGCLDIV
TSYVNDNKGQAVGRLVVKEIRPNVTIDYEKFEVLYLTVRVVDTETEIGEPYDELTFTITI
LDMNDNPPVWVNGTLEQTLRVREKSGAGTIIGTVTATDADGPQYNQVRYTIVPREDTPED
LVKIDFDSGQLAVDRSGAIDADEPRDKLYYTILASDRCSQPDNTTCGPDSTYFITEGKVT
IQIIDTNDQIPRARTDRYNTTVYIHENAEPGKEVVTLVAEDGDRDVMYNTIRYQINYGVN
MRLNDFFAIEPESGRVYVHYTTHEVLDRDGNEPTHRIFFTLIDNFNFQGDGNRNQNTTDI
EVILLDVNDNAPQLPLPNFIWSISENAQQGIRLNPGIFAEDRDEPNTDNSRVGYEITNLT
LTNRDITPPELFTVMHVFISDNIYNVSAELEVVRHLKGFWGNYDIGIRAFDHGVPRMESS
EIYQITIIPYNFESPKFKFPLDAATLRFSKERALVNSVLVLATGELLERVSASDSDGLQA
GEVTFEVVGDELASEHFRILNNGDNIGTLLLTQPLPTDQQIIQFELKLRATDGGLDPGPL
SSEVTVKAVFVPTQGEPIFPSSTASVAFVEKEVGLTERQQLPLAEDPKNHLCDKDCRDIY
YAIISGNNDGIFALDPVTNVLTLNKALNRSESESHVLRVATSNEKNISPSLATSATHSDG
AQITYSIDFSSMQVDPSLNNVRNTAFILNSNSGLMTLNIQPTASMQGMFEFNVLATDPQE
AFDTSAVKIYVVSSRNRVSFLFLNMLQQIEQMTDFIASTFTSGFNMTCNIDQVLPATDEA
GSTRDNVTEVRAHFIKDDVPAEASVIEALRGDISRLRLIQGTLISKELVLQDLVTDISPS
ELADGRALLYTLAAVAGVMTILLLVTIVVYFWRTRVLNRRLQALSMTKYGSQDSGLNRLG
LAAPGTNKHAVEGSNPIWNESIKAPDFDALSETSDDSDLIGIENLEQFRDDYFPPVGSDS
AEGVTNTEPVSTHLNNFGFNPTPFTPEFANKPRQYKI