| New model in OGS2.0 | DPOGS213610 |
|---|---|
| Genomic Position | scaffold271:- 148249-150968 |
| See gene structure | |
| CDS Length | 2103 |
| Paired RNAseq reads | 205 |
| Single RNAseq reads | 592 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011804 (6e-145) |
| Best Drosophila hit | Gemin3 (2e-53) |
| Best Human hit | probable ATP-dependent RNA helicase DDX20 (7e-76) |
| Best NR hit (blastp) | PREDICTED: hypothetical protein [Nasonia vitripennis] (3e-98) |
| Best NR hit (blastx) | PREDICTED: hypothetical protein [Nasonia vitripennis] (1e-92) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0016787 hydrolase activity GO:0005634 nucleus GO:0004386 helicase activity GO:0005524 ATP binding GO:0005681 spliceosomal complex GO:0017053 transcriptional repressor complex GO:0003677 DNA binding GO:0000166 nucleotide binding GO:0008380 RNA splicing GO:0006397 mRNA processing GO:0005515 protein binding GO:0008026 ATP-dependent helicase activity GO:0003676 nucleic acid binding GO:0000122 negative regulation of transcription from RNA polymerase II promoter GO:0043065 positive regulation of apoptosis GO:0016481 negative regulation of transcription GO:0019904 protein domain specific binding GO:0016564 transcription repressor activity GO:0006917 induction of apoptosis |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL12337 |
Nucleotide sequence:
ATGCTCCTTTCTTCAAATACTTTAAAAGGTCTCAAAGATTCCGGATTTCTTAAACCATCG
CCAATTCAATTACATGGTATTCCTTTAGGAAAATGTGGCTTTGATTTATTACTGGAAGCC
AAGTCTGGGACTGGAAAGACCGCAGTCTTCACTGTCATAGCTTTAGAAAAAATAGATTTG
AAGAAGGGCTTGCAAGTTGTAATACTTGCTCCGACTCGTGAAATAGCTTCACAAATATGT
GATGTGTTAAGGCAAATAGGATGTCACTATAATGGGTTGCGCATCGAGGTTGTGATGGGA
GGGCTACCAGTACAAGATGATATAGAAAAATTTAAAAATAATAATGTTCATGTTGTAGTC
GGGAGTCCAGGTCGTTTAAGGCACCTTATACAAAATAAACATATAGATATCTTAGGAGTG
AGACTGCTTGTTCTGGATGAAGCCGATAAGTTAATGGAGAAAAGCTTTTTACCTGATATA
AAGTATATCCACATGGTTCTGCCAAAACAAAAACAAGTTATATTGAGTAGCGCCACCTAT
CCAGATGAAATAAAAGAATATATAGGGCAATTTGTGCAAGATCCTCAACACTTATGCCCT
AATAACAACTGTGTACTATTAGGTGTTGTACAAAAAATAACAACTGTAAAATATAATAGT
AACATCATAAGACAGACAGAGTTTAGATTCCAAGAACTCTTGAAAATATTAACTAAAAAA
CATTTCAAGCAATGCTTAGTATTCTGTAACTATCAGGGAAGAGTCAGTGAAGTACATAAA
TTATTAACAAAGGCAAAGTGGCCCTCTGAACAGTTGTATGGCAACCAAGATCAAATGGAC
CGGCTAGACGCCATCAAAACATTACAGGAATATAAATGCAGGATTTTGATATCAACTGAT
CTAGCTGCTAGAGGTATAGATGCATCAAATGTAGATTTAGTGGTGAATTTTGAACCCCCC
TATGAGTGGCAAACATATTTACATAGAATTGGTAGAGCTGGTAGGTTTGGTTCTTATGGC
ATGGCAGTTACCATACTGAGCGAAGGAGCAGAACATAAAAAGTTTTTAAATTTATTAGAT
TCCATGAAATTAGGTAAATTAGAGTGTTTTTGGGATGACGATGTGATAAAAGATGACAAC
AACAAGAATTTAAAAGGCTCGGAAAATATTATTGCACAGAACGCCAAATGTAATAAAGGC
AATTATAAGGAGCTGTGGAATATTTTATGTGGAGATGATAAAGTTACAAACGGGGAAGAC
GTAAAACTAGAAAGCTTCGATGAACTTTTGGTTTCCTTACAAAACACTAAAGTAGAATCT
CACAACGGACCGGTAACGTTTCATAGTTTACTCGATTCTTTTAATAATGAATCGCCTTCA
AGAAACTTGGATGTGAAATATAAAAATATTTGGATTCCAAAAGAATTTTGTCAAAATTTA
AATTTATCTTTAGCTTTTAATGGAGAGCCATTGGACAATCACATGGTAGAGAGTGTGACA
AGGGAAATTGAAGAAATCAAAGCAGATAATTGCAATAATGACAAACTAAAATTAGTGTTA
AAAGAGTCGGATAAAAAAAACAATTCTGAGGTGCATTTTGACAGTAATTTAAATTCCACT
GACGACCTGGACCATAATGAGAAAGATGTGATGAAAAATTCTTCAAATATTCCTGAAAGA
GCGAATATTACATGTAACAACGACAGCGTTTGGAACTCGAATATGGAATTCGAAAAATTA
CAATTGCCAACAGCTTTTTCTAATGGGAAAAACATTTATTCGGAAAAGAAGATCTCAAAA
AAGGTTAAATTCCCCCACACTAAGAAAATCATTGAAAATATTTCAGATTTCCCTGGTAAT
TCATATAAAACCACGAAAATGTCATCAAAGAAATCTGAAGACTCTTTAATATATAATGAA
GACGTAAATTCAAATTGCAATTCGAAATATATGTACAAAAATAAAAATCGGAGTAAAGAA
GACCAATCGAGTAAAAAAATTTATAACAAGAATCAGTCATATGAAAATTGGTATAACCAA
TTAAAAGTTAGGGTTAAGTATTTCGAAGCAGCATTGTATATAGAGGAACTAAGTAGAATG
TAA
Protein sequence:
MLLSSNTLKGLKDSGFLKPSPIQLHGIPLGKCGFDLLLEAKSGTGKTAVFTVIALEKIDL
KKGLQVVILAPTREIASQICDVLRQIGCHYNGLRIEVVMGGLPVQDDIEKFKNNNVHVVV
GSPGRLRHLIQNKHIDILGVRLLVLDEADKLMEKSFLPDIKYIHMVLPKQKQVILSSATY
PDEIKEYIGQFVQDPQHLCPNNNCVLLGVVQKITTVKYNSNIIRQTEFRFQELLKILTKK
HFKQCLVFCNYQGRVSEVHKLLTKAKWPSEQLYGNQDQMDRLDAIKTLQEYKCRILISTD
LAARGIDASNVDLVVNFEPPYEWQTYLHRIGRAGRFGSYGMAVTILSEGAEHKKFLNLLD
SMKLGKLECFWDDDVIKDDNNKNLKGSENIIAQNAKCNKGNYKELWNILCGDDKVTNGED
VKLESFDELLVSLQNTKVESHNGPVTFHSLLDSFNNESPSRNLDVKYKNIWIPKEFCQNL
NLSLAFNGEPLDNHMVESVTREIEEIKADNCNNDKLKLVLKESDKKNNSEVHFDSNLNST
DDLDHNEKDVMKNSSNIPERANITCNNDSVWNSNMEFEKLQLPTAFSNGKNIYSEKKISK
KVKFPHTKKIIENISDFPGNSYKTTKMSSKKSEDSLIYNEDVNSNCNSKYMYKNKNRSKE
DQSSKKIYNKNQSYENWYNQLKVRVKYFEAALYIEELSRM