| New model in OGS2.0 | DPOGS200071 |
|---|---|
| Genomic Position | scaffold2421:- 30562-35646 |
| See gene structure | |
| CDS Length | 1524 |
| Paired RNAseq reads | 4683 |
| Single RNAseq reads | 15054 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004592 (0.0) |
| Best Drosophila hit | calsyntenin-1, isoform B (5e-128) |
| Best Human hit | calsyntenin-2 precursor (3e-105) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP007103-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP007103-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0016339 calcium-dependent cell-cell adhesion GO:0005887 integral to plasma membrane GO:0005509 calcium ion binding GO:0007268 synaptic transmission GO:0007156 homophilic cell adhesion GO:0005576 extracellular region GO:0045211 postsynaptic membrane |
| InterPro families | IPR002126 Cadherin IPR013320 Concanavalin A-like lectin/glucanase, subgroup IPR008985 Concanavalin A-like lectin/glucanase IPR015919 Cadherin-like |
| Orthology group | MCL10738 |
Nucleotide sequence:
ATGGTGATTGACGAGAACGAGGCACGTCTCCGTGTACGTTACCCACTTAACTGTGAGAAA
CGCCGTAATTACAAGTTCGACATCGCCGCTGTTGGTTGTGATGGGTCTTACTCCAACACT
GTACCGGTCCATATAACGGTGACGGATGTGAACGAATTCGCTCCGGTCTTCAATCAGGCT
GCCTACGTCCGGTCAGTGGATGAGGGGAAGGTGTACGACGAGATCGTACGTGTGGAAGCG
ACTGATCGCGACTGTACCCCGCGTTACGGTGACGTCTGCAAGTACGAGATTGTAAACGAT
GGAGACAGGAACCAGCCGTTCGCTATCGACAATGAAGGTGTTATTCGTAATACGGAACCT
CTGGAATACGATAAATCCCACAACCATATCCTGTCCGTGGTTGCATACGACTGTGGGATG
ATGCCATCCGCACCAGTTCTGGTCACTATCAAGGTCAACAAACCCTGCCGAGCTGGGTGG
AAAGGTCTTGCTGAGCGTGTGGATTACGCTCCTGGAACAGGTCCTCTAGCACTTTTCCCA
GCTGCTCGTTTAGAAGCATGTTCTAGCGACGAGCGCTGTCCAGGTGTTACAAGAATCCAA
GCCGCTGTAACTCTCCAGGCTTCCAGAGCTGGTGTTGCCTGTGACAGGGACACATATACC
TTACACGCCCAAAGAACAGTATGCGGTCTGGATCCCAAAACAGTGGATTTGCTACCCAGC
CCTGGCGTAGGAAACGAGTGGGCGAAGTCTCTCAAACCCGACTCAGGTCGTGACGGCGAG
CAGTTGTTCGAGTTCGACGGCGAGACATCAGCCGTTGTACCAGAATCAATACTACCACAT
TCCCTCGGCAGCACTTTCTCCGTCAGCACCTGGCTAAGACACGCCCCGCCCCCAGACCAC
GATAAGCACCGCAAGGAACACGTGCTGTGTCTCGCCGACGACCACAAAATGAATCGTCAC
CACTACGCGCTGTTCGTCCGCAACTGTCGTCTGATACTTCTTCTGAGACGTGACTTCGGT
GAAGGTGATCTGAACATCTTCAGACCAGCCGAGTGGAGGTGGAAGCTGCCAGAGGTGTGC
GACAACGAGTGGCATCACTACGCTATCAACGTGCGCTTCCCCAACGTAGAGCTGTACGTG
GACGGTGAGCCGTACCGCGGCGAGAGGGGCCCGGAGGTCATCGACGACTGGCCGCTGCAC
CCGGCTCACGGCGTCAACACCACCATGGTAGTGGGCGCCTGCTGGCAGGGTACGGAGAGT
GATATGAAGCACCATCTCCGCGGTTGGCTGGCGGGGCTCGGAGCATTGCCGGGGGCTGTT
CAGCCGGCAACGGCGCTGAGATGCGCGGCCCGCTGTAGAGAGGGACTCAGTCTAGCGCCT
GATCTATATCTGAAGTCGGTGTCCGTGGAGGGTGACAGCGCCTCGGAGGTGGAGACCTTA
GTGAGGCGGGTGGCGTATGGAGACGCCAGGGTGTTCCCGACGCCTGGAAGAAGAAACGTA
CACCTGGCCACCACTATCACGTGA
Protein sequence:
MVIDENEARLRVRYPLNCEKRRNYKFDIAAVGCDGSYSNTVPVHITVTDVNEFAPVFNQA
AYVRSVDEGKVYDEIVRVEATDRDCTPRYGDVCKYEIVNDGDRNQPFAIDNEGVIRNTEP
LEYDKSHNHILSVVAYDCGMMPSAPVLVTIKVNKPCRAGWKGLAERVDYAPGTGPLALFP
AARLEACSSDERCPGVTRIQAAVTLQASRAGVACDRDTYTLHAQRTVCGLDPKTVDLLPS
PGVGNEWAKSLKPDSGRDGEQLFEFDGETSAVVPESILPHSLGSTFSVSTWLRHAPPPDH
DKHRKEHVLCLADDHKMNRHHYALFVRNCRLILLLRRDFGEGDLNIFRPAEWRWKLPEVC
DNEWHHYAINVRFPNVELYVDGEPYRGERGPEVIDDWPLHPAHGVNTTMVVGACWQGTES
DMKHHLRGWLAGLGALPGAVQPATALRCAARCREGLSLAPDLYLKSVSVEGDSASEVETL
VRRVAYGDARVFPTPGRRNVHLATTIT