| New model in OGS2.0 | DPOGS205379 |
|---|---|
| Genomic Position | scaffold100:+ 27122-46248 |
| See gene structure | |
| CDS Length | 4635 |
| Paired RNAseq reads | 6909 |
| Single RNAseq reads | 15399 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008779 (1e-09) |
| Best Drosophila hit | CG5931 (0.0) |
| Best Human hit | U5 small nuclear ribonucleoprotein 200 kDa helicase (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 10 [Canis familiaris] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC016163 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0030532 small nuclear ribonucleoprotein complex GO:0005682 U5 snRNP GO:0008380 RNA splicing GO:0003724 RNA helicase activity GO:0004004 ATP-dependent RNA helicase activity GO:0005681 spliceosomal complex GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome |
| InterPro families | IPR014001 DEAD-like helicase IPR003593 ATPase, AAA+ type, core IPR001650 Helicase, C-terminal IPR004179 Sec63 domain IPR023290 Sec63-domain IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL10194 |
Nucleotide sequence:
ATGGCTGACGCGGCCGCCAGACAGTTGCAATATGAATACAAGGCGAACTCGAACCTTGTA
CTCCAAGCTGATGTGCGCCTCATAGAGCGTCGTGGTCGTGATGAGGCCACGGGGGAGGTG
TTGTCTCTGTCCGGCAAGTTGGGTGGCACGAAGATGGGGGATAGGGCTCAACGGACAAAA
CCTGATAAGGCCGAGGAGAGGAAAGCCAAACGTCAGAAGCGTGATGAGGCAACATATGAG
TTGACCAAGTCCAAATCCCGAGCTGCATGGGCTGATGAAACTCCCGGGGCTTTGTATAGA
CCGAGAGCCCAGCACACTCGACACGCCTATGAGCTGCTGTTAGCCTTCATGCAAAGCGCC
TTGGGCGACCAGCCCAGGGATGTTCTGTGCGGAGCTTGCGATGAGGTGTTGGTGGTGTTG
AAAAACGAAAAGATGAAGGACCTGGAAAGGAAGAAAGAGATCGAGTTACTCCTCGGTCCG
ATAGCAGATGAAAGATTCGCTTTATTAGTTAATTTAGGTAAAAAAATCACCGACTTCACA
ATAAGTACATCCACCGAAGGCAACACGGAGATCGATGAAACATATGGCATTAATGTGCAG
TTTGAGGAGTCGGAGGAGGAAGATGACGAGGATGCTTATGGAGAGGTCCGTGATGAAGAG
AGGGAGGAGGGAGATGCTTCAGAGGCGGAGGGTGGGGAGAGTTCCGGGGAGGAGAGTGGG
GGGGAGAAGAAAAACGCCATACACGCTAATCTGTCAGAGGAGCAGTCCAGCAAGCGTCGG
GACGCCGTCCTCCATGCGATGGATATAGACGCCTACTGGCTGCAGCGGAGACTCTCAAGA
CACTTCCCGGATGCTATGTTATCACAGGCGAAGTCCTCCGAAGTGCTGCAAGCTCTGGCG
GATGCGGCTGATGAAAGAGACCTGGAGAACAGGCTAGTGTTGCTGCTGGGTTACGACTGT
TTCGACCTGGTCAAGACGCTCAACAAGTACAGATACACGGTTCTGTACTGCACGAAACTG
GCATCGTCACAGTCTGAGAGCGAGAGGGCTGCTATAAGAGAGGAGATGGCAACAAAACCA
CACCTGCAGAAGATCCTGGCACAGCTGGACACCGGGAAAGGGGAGGATGAGAGCACGGTG
CAATCGGAGCAGCCCCGCAAGCGTTCCAGGTCGGTGCTCGAGGGAGGCTGGGCTGGCAGC
GTGGCGGGGAACCGGAAACAGCTGCAGCTAGACGAGCTGGTGTTTGCAGCTGGGGCTCAC
TTCATGGCCAACAAGCGCTGTCAGCTACCACCTGGATCCTTCAGGAAGCAGCGGAAAGGC
TACGAGGAAGTCCACGTCCCGGCGCTGAAACCAAAGCCGTTCGAGGAGAACGAGGTGTTG
CTACCCATAGAGAAGCTGCCCAAGTATGTACAACCCGCCTTCGAGGGCTTCAAGACGCTC
AACCGGATACAGAAGCTGCCCAAGTATGTACAACCCGCCTTCGAGGGCTTCAAGACGCTC
AACCGGATACAGAGTCGCATCTCTACAGCGGCCCTGGAGTCGGATGACAATCTGCTGGTC
TGCGCGCCCACGGGAGCGGGCAAGACGAACGTGGCGCTGCTGTGCATCCTGAGGGCGTTG
GGCAAACACGTCAACCACGACGGCAGCGTCAACGTGGGCGACTTCAAGGTGGTGTACGTG
GCGCCCATGAGGTCGCTGGTGCAGGAGATGGTGGGCAATTTCAGCAAGCGGCTGGCGGCT
TACAACATGAAGGTGTCGGAGCTGACGGGTGACCACCAGCTCACCAGGGAACAGATAGAC
GACACGCAGCTCATAGTGTGCACGCCTGAAAAATGGGACATCGTCACTAGGAAAGGTGGC
GAGCGTTCCTTCACCAACCTGGTCCGCCTCATCATCATAGACGAGATTCATCTCCTGCAC
GACGAGCGCGGTCCAGTTCTGGAGGCGTTGGTCGCCCGCACGCTGAGGACGGTGGAGCAC
ACACAGGAAGAGATATTGGTGTTCGTGCACTCCAGGAAGGAGACGGGGAAGACGGCGCGG
GCTGTCCGCGACACCTGCCTGGAGAAGGACACGCTCGGACATTTCCTTAGGGAGGGTTCC
GCCAGCGTGGAGGTCCTACGTACCGAGGCTGAGCAGGTGAAGAACCCTGAACTCCGTGAG
TTACTACCCTACGGTTTCGCCATACATCACGCGGGTATGAGCCGAGTGGACAGGACCCTG
GTAGAAGATCTGTTCGCTGACAGACATATACAGGTGTTGGTATCAACGGCTACCCTGGCG
TGGGGTGTGAACCTGCCAGCACACACGGTCATAGTGAAGGGGACGCAGGTGTACAGCCCC
GAGAAGGGCCGCTGGAGCGAGCTGGGGGCGCTGGACGTGCTTCAGATGCTGGGAAGAGCT
GGACGGCCGCAGTACGACACCAAGGGAGAAGGCATTCTGATAACAAATCACTCCGAGCTG
CAATACTACCTGTCGCTGTTGAACCAGCAATTGCCGATCGAATCACAGCTCGTCTCCAAG
CTACCGGATATGCTGAACGCGGAGATAGTGCTGGGTTCCGTACAGAGCGTGAGGGATGCT
GTCACGTGGCTCGGTTACACGTACCTGTATGTGCGCATGCTCCGCCAGCCCGCTCTGTAC
GGTGTGAGCGAGGACAGGCTGAAGGACGACGCGTTGTTGGAACTACACCGGGCCGACCTC
GTTCACACCGCCGCCTCGCTGCTCGACAAAGCCGGTCTAATTAAATACGAGCGGAAATCC
GGTCACTTCCAAGCCACTGAGCTGGGTCGTATAGCTTCTCACTACTACTGCACCTATGAG
ACCATGCAGAACTACAACCAGCTGTTGAAGCCCACGTTGGCTGAGATAGAGTTGTTCAGA
GTGTTCTCGCTGTCTGCTGAGTTCAAGCACATAACTGTCAGGGACGAGGAGAAGCTGGAG
CTGCACAAGCTCATGGAGCGGGTTCAAAATCATTCCACATATGCAGACCGACCTCTGACC
CGCTGGGCGCAGCTGGTCGATAAGACGCTGGCTCTGTGCAAGATGGTAGACAAACGGATG
TGGCAGTCCATGTCGCCGTTGAGACAATTCAGGAAAATGCCGGAGGAGGTGATCAAAAAG
CTGGAGAAAAAGAACTTCCCCTGGGAGAAGCTGTACGAGCTGGGCCCCAATGAGATCGGT
GAACTGGTCCGAGCACCCAAGTTAGGGAAGATGATACACAAATATGTACACCAGTTCCCC
AAGTTAGAACTGGCAACACACATACAGCCCATCACGAGGTCCACACTGAGGGTCGAGCTT
ACTATAACTCCTGACTTCCAATGGGATGAGAAGATCCACGGCCAGTCTGAAGCTTTCTGG
ATCCTGGTCGAGGATGTGGACTCTGAGACCGTGCTGCACCACGAGCAGCTGCTGCTGAAG
CACAAGTACTGCCGCGACGAGCAGCACGTGAAGCTGTTCGTGCCGGTCTTCGAGCCACTG
CCTCCACAGTACTTCCTCAGGGTTGTATCAGATCGGTGGATAGCCGCGGAAACGCAGCTT
CCAGTGTCATTCCGGCACCTCATCCTTCCGGAGAAAAACCTGCCGCCCACCGAACTTCTG
GACCTGCAACCTCTGCCGATATCCGCCCTCCGGAACGAGAAATGGGAACAGCTGTACAAA
GACGCCTTCCCGCAATTCAATCCAGTGCAGACACAGGTCTTCAACGCTGTATACAACTCG
GACGACAACGTGTTCGTGGGTGCTCCATCAGGGTCTGGCAAGTCGGTGATCGCTGAGCTG
GCACTTCTCCGACTCCTGACCCACAGCCCAGCCTCCAGAGCGGTGTACCTGGTCCCTCAT
GATGCACTCGCAGATATAGTGTTTGCGGACTGGTATCACAAGTTCGGTGCCCGCTTCAAT
CTGAAGGGCTTCAACATCTCCCACGCGGGGTCCCGCCTAGCGGCCATGACCCGTCCCATC
TACAATGCGATCCTCCGCCACGCGGGCTCGCGTCCCGTGGCGGTGTTCGTCCCGTCCCGG
CGTCACGCTCGCGTCCTGGCGGCAGACCTGCTAGCCCTGGCCGGGGCACACGACACGCCG
GGGAGATTCCTCCGCGCTCGCCCTGACCTAGTCCAGCCCTTCCTTGATAAGGTGCAGGAT
AGGACGCTCCGCGAGACGCTAGCAGCTGGGGTGGCGTATCTGCATGCTGGGGTTTGTGCT
GGAGATCGCCGTGCAGCGCTTCAACTTCTGGAATCCGGCGCGGCCCAGCTGTGCGTGGCG
GCGGCTGAACTGGCGTACGCCTTCACCGCTCACGTCCACACCGTCATAGTGGCTGATACT
AGTGTCTACAACGGTAAGCTGCACTGCTACGAGCAGTACCCGGTGACGACGGTGCTGCAA
ATGCTGGGCCGGGCCTGCAGACCTCTGGAAGACGAGCACGCAGTCGCAGTACTCATGTGC
GCTCAGCATCACAAGACGTTCTTCACGAAGCTTCTCAATGACTGCCTACCCTTAGAGAGT
CACTTGGACCACCGTCTCCACGACCACATGAACGCTGAGATCGTGACGAAGACGATAGAG
AACAAACAGGACGCGGTGGACTACCTCACCTGGACCTTCCTCTACAGGAGACTCACGCAG
AATCCCAACTACTAG
Protein sequence:
MADAAARQLQYEYKANSNLVLQADVRLIERRGRDEATGEVLSLSGKLGGTKMGDRAQRTK
PDKAEERKAKRQKRDEATYELTKSKSRAAWADETPGALYRPRAQHTRHAYELLLAFMQSA
LGDQPRDVLCGACDEVLVVLKNEKMKDLERKKEIELLLGPIADERFALLVNLGKKITDFT
ISTSTEGNTEIDETYGINVQFEESEEEDDEDAYGEVRDEEREEGDASEAEGGESSGEESG
GEKKNAIHANLSEEQSSKRRDAVLHAMDIDAYWLQRRLSRHFPDAMLSQAKSSEVLQALA
DAADERDLENRLVLLLGYDCFDLVKTLNKYRYTVLYCTKLASSQSESERAAIREEMATKP
HLQKILAQLDTGKGEDESTVQSEQPRKRSRSVLEGGWAGSVAGNRKQLQLDELVFAAGAH
FMANKRCQLPPGSFRKQRKGYEEVHVPALKPKPFEENEVLLPIEKLPKYVQPAFEGFKTL
NRIQKLPKYVQPAFEGFKTLNRIQSRISTAALESDDNLLVCAPTGAGKTNVALLCILRAL
GKHVNHDGSVNVGDFKVVYVAPMRSLVQEMVGNFSKRLAAYNMKVSELTGDHQLTREQID
DTQLIVCTPEKWDIVTRKGGERSFTNLVRLIIIDEIHLLHDERGPVLEALVARTLRTVEH
TQEEILVFVHSRKETGKTARAVRDTCLEKDTLGHFLREGSASVEVLRTEAEQVKNPELRE
LLPYGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIVKGTQVYSP
EKGRWSELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLVSK
LPDMLNAEIVLGSVQSVRDAVTWLGYTYLYVRMLRQPALYGVSEDRLKDDALLELHRADL
VHTAASLLDKAGLIKYERKSGHFQATELGRIASHYYCTYETMQNYNQLLKPTLAEIELFR
VFSLSAEFKHITVRDEEKLELHKLMERVQNHSTYADRPLTRWAQLVDKTLALCKMVDKRM
WQSMSPLRQFRKMPEEVIKKLEKKNFPWEKLYELGPNEIGELVRAPKLGKMIHKYVHQFP
KLELATHIQPITRSTLRVELTITPDFQWDEKIHGQSEAFWILVEDVDSETVLHHEQLLLK
HKYCRDEQHVKLFVPVFEPLPPQYFLRVVSDRWIAAETQLPVSFRHLILPEKNLPPTELL
DLQPLPISALRNEKWEQLYKDAFPQFNPVQTQVFNAVYNSDDNVFVGAPSGSGKSVIAEL
ALLRLLTHSPASRAVYLVPHDALADIVFADWYHKFGARFNLKGFNISHAGSRLAAMTRPI
YNAILRHAGSRPVAVFVPSRRHARVLAADLLALAGAHDTPGRFLRARPDLVQPFLDKVQD
RTLRETLAAGVAYLHAGVCAGDRRAALQLLESGAAQLCVAAAELAYAFTAHVHTVIVADT
SVYNGKLHCYEQYPVTTVLQMLGRACRPLEDEHAVAVLMCAQHHKTFFTKLLNDCLPLES
HLDHRLHDHMNAEIVTKTIENKQDAVDYLTWTFLYRRLTQNPNY