| New model in OGS2.0 | DPOGS211554 |
|---|---|
| Genomic Position | scaffold3837:- 4438-5754 |
| See gene structure | |
| CDS Length | 1317 |
| Paired RNAseq reads | 1652 |
| Single RNAseq reads | 5851 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013761 (0.0) |
| Best Drosophila hit | partner of paired (4e-122) |
| Best Human hit | F-box/LRR-repeat protein 14 (2e-100) |
| Best NR hit (blastp) | GL10712 [Drosophila persimilis] (5e-148) |
| Best NR hit (blastx) | GA22149 [Drosophila pseudoobscura pseudoobscura] (4e-141) |
| GeneOntology terms | GO:0000152 nuclear ubiquitin ligase complex GO:0006511 ubiquitin-dependent protein catabolic process GO:0019005 SCF ubiquitin ligase complex |
| InterPro families | IPR022364 F-box domain, Skp2-like IPR001810 F-box domain, cyclin-like IPR006553 Leucine-rich repeat, cysteine-containing subtype IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype |
| Orthology group | MCL13394 |
Nucleotide sequence:
ATGACTGCGTGGACGGAGGAGGTGCTGTCCTGGCGAGACGAGCTGGGCATCACCGAACTA
CACACCAACCGGAGGAAGAACAGAACCGCGCCGTATAGACTGCACCGGCCGCACCTTGCG
AGTCACGTGCCGGAGCCCGAGGTTCAGGGGACGCATATATCGAGGCTGTACCCGGAACTG
CTCGCTTTGATCTTCGAGAGACTGCCGGTGAGGGATAGAGGCAGGGCGGCTCAAGTGTGT
CGCTCGTGGAGGGACGCCGCGGACAGGCGGTCCGTGTGGCGAGGTGTCGAGGCCGCCTTA
CATCTTCGCAGGCCTGCCCCCGTTCTGTTCGCGTCGCTAGCGAGGCGAGGTGTGAGGAGA
CTACAGGTCCTATCGCTCAGACGAGGACTAAGAGACGCGGTAGCAGCTCTCCCGGGCTTG
GAGTCGCTGTCGTTGAGTGGTTGTTATAGTGTTACGGACGCGGCGTTAGCGAGCGCCTTC
GCCACAGAGTTACCGGCTCTAAAACGATTGGATCTGTCTCTGTGTAAACAAGTTACGGAT
TCTTCTTTGGGGAGGATAGCGCAGTCTCTGAAGAACTTGGAGGAACTGGAACTGGGAGGG
TGTTGCAATGTGACAGACACGGGACTGTTGTTGATAGCATGGGGGCTGAGGAAGTTGAGG
AGGTTGAACCTCAGGTCGTGTTGGCATGTCAACGACGACGGTATAGCGCATCTCTGCGGA
GGCGGAGAGGCGAGAGGCACACCGGAGTTAGAGCATCTAGGACTCCAAGACTGTCAGAGG
CTGACGGACGAGGCGCTGAAGCACGCCGCTACAGGTCTTCCTAAACTGAAATCCATTAAT
CTATCTTTCTGCGTAGCCGTCACTGACGCCGGGTTACGACATCTGGCGAGGTTACCTCAC
TTGGAGGACGTGAATCTCAGAGCGTGCGACGGAGTTTCCGACGCTGGTGTTGCACATTTA
GCGGAGAGCGGCAGGCTGAGGGCTCTGGACGTGTCTTTTTGCGACAAAGTCGGTGACGAA
GCCCTGTCTCACGCGACTCTCGGCCTGTCGGGCTTGAGATGTTTATCGTTGAGTGCGTGT
CGCCTCACGGACGAGGGTCTGGAGAGGGTGGCTAGGTTATCGCAATTAGAGACACTTAAT
ATAGGCCAATGTACTCAAGTGACGGACCGGGGCCTGAGAGCCCTGGGGGAAGGTTTGAAG
AACCTGAAGGCCATAGACTTGTATGGATGTACGTGCATAACTCACGAGGGTCTGGATCAC
ATCGTGAAGCTGCCGAGGCTGAGTGTTTTAAACCTGGGCCTGTGGCATGTGCGGTGA
Protein sequence:
MTAWTEEVLSWRDELGITELHTNRRKNRTAPYRLHRPHLASHVPEPEVQGTHISRLYPEL
LALIFERLPVRDRGRAAQVCRSWRDAADRRSVWRGVEAALHLRRPAPVLFASLARRGVRR
LQVLSLRRGLRDAVAALPGLESLSLSGCYSVTDAALASAFATELPALKRLDLSLCKQVTD
SSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHVNDDGIAHLCG
GGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDAGLRHLARLPH
LEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGLSGLRCLSLSAC
RLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGCTCITHEGLDH
IVKLPRLSVLNLGLWHVR