New model in OGS2.0 | DPOGS215851  |
---|---|
Genomic Position | scaffold894:+ 12664-29061 |
See gene structure | |
CDS Length | 471 |
Paired RNAseq reads   | 0 |
Single RNAseq reads   | 18 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002951 (3e-22) |
Best Drosophila hit   | Cadherin-N, isoform B (8e-23) |
Best Human hit | protocadherin beta-6 precursor (6e-07) |
Best NR hit (blastp)   | GH10146 [Drosophila grimshawi] (1e-21) |
Best NR hit (blastx)   | GH10146 [Drosophila grimshawi] (2e-21) |
GeneOntology terms    | GO:0005911 cell-cell junction GO:0016021 integral to membrane GO:0007156 homophilic cell adhesion GO:0005886 plasma membrane GO:0016339 calcium-dependent cell-cell adhesion GO:0007413 axonal fasciculation GO:0050839 cell adhesion molecule binding GO:0004872 receptor activity GO:0005887 integral to plasma membrane GO:0007155 cell adhesion GO:0007412 axon target recognition GO:0008013 beta-catenin binding GO:0007411 axon guidance GO:0005509 calcium ion binding GO:0050774 negative regulation of dendrite morphogenesis GO:0048846 axon extension involved in axon guidance GO:0016318 ommatidial rotation GO:0031290 retinal ganglion cell axon guidance GO:0045467 R7 cell development GO:0045463 R8 cell development GO:0048841 regulation of axon extension involved in axon guidance GO:0048676 axon extension involved in development |
InterPro families    | IPR015919 Cadherin-like IPR020894 Cadherin conserved site IPR002126 Cadherin |
Orthology group | MCL24153 |
Nucleotide sequence:
ATGTTTTTGTGCTTGGAAGCGTTGCTCGTTTGCAACGACGCACAGCTAGGCGGGGTTGTA
GGGGCGGGCGAACCAAGTCAGCGCCAGTCGGCCTTAGTTCCTTTGGCGAACGCTCGTTTT
CGCGCTTCCCCCACAAGTGGAAGAACGCCAAGTCTATACACTGTAGACATAGCTAAGTCA
GTAAGGTTTACGACCGGCACATGTGCTCTAGACGACAGAAACATTACCAAATTCATTCGC
ATCGGCATCGCTGACAAGAATGACAATCCCCCATACTTCGACAAAGAGTTATACGAGGCG
GAAGTTGACGAAAATGAAGACATTCAACATACCGTCCTTACAGTTACCGCCAAAGATCAT
GACGAATCAGGAAAACGAAACTTCTCAGAGATTGCAGTCAAATATGGCTGTGGTGGTTCT
TCTGCTGCTAAATATAATATAGCTATAGTTCGAGCCATGCTCATCGCGTGA
Protein sequence:
MFLCLEALLVCNDAQLGGVVGAGEPSQRQSALVPLANARFRASPTSGRTPSLYTVDIAKS
VRFTTGTCALDDRNITKFIRIGIADKNDNPPYFDKELYEAEVDENEDIQHTVLTVTAKDH
DESGKRNFSEIAVKYGCGGSSAAKYNIAIVRAMLIA