| New model in OGS2.0 | DPOGS212408 |
|---|---|
| Genomic Position | scaffold871:- 7858-10016 |
| See gene structure | |
| CDS Length | 1374 |
| Paired RNAseq reads | 180 |
| Single RNAseq reads | 605 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002808 (4e-17) |
| Best Drosophila hit | CG8078 (4e-143) |
| Best Human hit | cytoplasmic tRNA 2-thiolation protein 1 (5e-76) |
| Best NR hit (blastp) | GF12710 [Drosophila ananassae] (3e-151) |
| Best NR hit (blastx) | PREDICTED: similar to CG8078 CG8078-PA [Tribolium castaneum] (2e-147) |
| GeneOntology terms | GO:0000049 tRNA binding GO:0002098 tRNA wobble uridine modification GO:0005829 cytosol GO:0034227 tRNA thio-modification |
| InterPro families | IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR000541 tRNA 2-thiolation protein IPR020554 Uncharacterised protein family UPF0021, conserved site |
| Orthology group | MCL12816 |
Nucleotide sequence:
ATGCCTGTACTATGCAAAGCAGGATGTGGAAAAAATGCTATGTTAAAGCGTCCTAAAACG
GGGGATACTCTATGTAAAGAATGCTTTTACGAAGCCTTTGAAACAGAAATCCATTTTACA
ATAACAAAAGCAGAATTATTTAATAGAGGAGATTCTGTCGCCATCGCCGCCTCTGGTGGC
AAGGATTCAACCGTATTGGCACATGTACTTAAAACATTAAATCAAAGATATGACTATGGA
CTTAATCTTATGTTGCTGTCCATAGACGAGGGCATAACCGGCTACAGAGATGACAGCTTG
GAAACAGTCAAACAAAACAGAGATGATTACGAGATGAATCTCAAAATATTATCATATAAA
GATTTATATGGTTGGACCATGGACGAAATTGTAGCCCAAATCGGAAGAAAGAATAATTGT
ACATTCTGTGGAGTATTCAGGAGGCAAGCTTTGGATAGAGGTGCCGCCATGCTTAATGTG
AAATGTATAGCAACAGGACACAATGCTGATGACATAGCAGAGACGGTGCTGATGAATGTG
CTGAGAGGAGACATAGCTCGGCTCAAGAGATGCACTGCTATATCTACTGGCAGCGAGGGC
ACAATTCCGAGAGTGAAGCCGTTGAAGTATACGTATGAAAAGGAGATTGTTATGTACGCT
CATTACAAGAAGCTGGTGTACTTCTCAACAGAATGTGTGTTTGCTCCAAACGCCTACAGA
GGTCATGCTAGGGCTCTGTTAAAAGATCTGGAAAAAATTAGACCTACTTGCATTATGGAT
ATCATATACTCAGGCGAAACAATGGCTGTGAAAGAGGAAGTGTCACTGCCCACACAGAGA
ATTTGCACGAGATGCAAATTTGTCTCCTCTCAAGAGGTATGCAAGGCTTGCGTTCTTCTG
GAAGGATTGAACAAGGGTTTACCAAAACTTGGCATTGGAAAGAGTTCCAAAGCCAAGAAG
ATGCTAGAAGAATACAACGCAAACCAAAATAGTACGAATAAAGCTATCGATGAAATTAAT
GTCGACTGCCAGAAAAATAATTGTGTCTCTAGAGGAAAAGCGTGCAGGTCGAATCGAAAT
AAAACAAATGATAACGAAGTCAACAGCCGAAACGGAGAAAAGTGCTGTAGTACACAGGAA
AAGACACATGACAGTGCTAATATAAGCAATACTAAATTAAACACACTTTTACAAGACTAC
GGCATACCAGAAAATGATTGTGGACACGATAAAAACTCATCAATAGGGGAAAGTTCGGAA
AATCATAATTTCGAAGTCGATTTACACAACGAAGATGTTACATCCTTAGCAGAGGAGACT
GACGCGTGTGGCGGAGCATGCGGCAAGATGGACTCCATGCATATAGGTTTCTGA
Protein sequence:
MPVLCKAGCGKNAMLKRPKTGDTLCKECFYEAFETEIHFTITKAELFNRGDSVAIAASGG
KDSTVLAHVLKTLNQRYDYGLNLMLLSIDEGITGYRDDSLETVKQNRDDYEMNLKILSYK
DLYGWTMDEIVAQIGRKNNCTFCGVFRRQALDRGAAMLNVKCIATGHNADDIAETVLMNV
LRGDIARLKRCTAISTGSEGTIPRVKPLKYTYEKEIVMYAHYKKLVYFSTECVFAPNAYR
GHARALLKDLEKIRPTCIMDIIYSGETMAVKEEVSLPTQRICTRCKFVSSQEVCKACVLL
EGLNKGLPKLGIGKSSKAKKMLEEYNANQNSTNKAIDEINVDCQKNNCVSRGKACRSNRN
KTNDNEVNSRNGEKCCSTQEKTHDSANISNTKLNTLLQDYGIPENDCGHDKNSSIGESSE
NHNFEVDLHNEDVTSLAEETDACGGACGKMDSMHIGF