| New model in OGS2.0 | DPOGS200726 |
|---|---|
| Genomic Position | scaffold402:- 5407-9440 |
| See gene structure | |
| CDS Length | 1893 |
| Paired RNAseq reads | 3337 |
| Single RNAseq reads | 8281 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001124 (2e-167) |
| Best Drosophila hit | recombination repair protein 1, isoform A (3e-96) |
| Best Human hit | DNA-(apurinic or apyrimidinic site) lyase (2e-85) |
| Best NR hit (blastp) | ap endonuclease [Aedes aegypti] (2e-112) |
| Best NR hit (blastx) | ap endonuclease [Aedes aegypti] (1e-108) |
| GeneOntology terms | GO:0006281 DNA repair GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity GO:0005634 nucleus GO:0008311 double-stranded DNA specific 3'-5' exodeoxyribonuclease activity GO:0004519 endonuclease activity GO:0003677 DNA binding GO:0005622 intracellular GO:0008408 3'-5' exonuclease activity GO:0006974 response to DNA damage stimulus |
| InterPro families | IPR004808 Exodeoxyribonuclease III xth IPR000097 AP endonuclease, family 1 IPR020847 AP endonuclease, family 1, binding site IPR020848 AP endonuclease, family 1, conserved site IPR005135 Endonuclease/exonuclease/phosphatase |
| Orthology group | MCL11144 |
Nucleotide sequence:
ATGGCGCCACGTACAGCTAAGGCTAAGAAAAATGCTGATGTTAAAGTTTCTGAGGGTGAA
GTTCCAAAAAAAGGTAGAGGGAAAGCTAAAAATGTGACAGAACAAGAACAAGTTGTCCCT
GAAGTTGTTATTGATAAAAATCCCTCAGTAGAAAAAAAAACAAAAAGGGGTAAAAATGCA
GTTGTTGAAAACAATGATGAGGCACAAATTATAGTCAAAGATGCACCACCAGCTAAAAAG
GGAAGGAAGAAGGCTGTTGAGGAACCCATTCCTGAATCAAACTCTCTAAATGGAGATAAC
TCGGATGAAAACGAGCCAGCAGTTCAATCGGATGATAACGAACAGAATGAAGAACATTCT
GAATCAAATGATAATGCTGAAGACACTCAAGCCAGTGCAGGCAAAGGTAGGAAAAAAGTT
AACAAGAAAGAACCTATAGAAAAAGAGGTTAAACCTAAAGAAACTGGCAGAGGAAAAAAA
AATGTGAAGCAGGAAAATATTACAGCAAAGAAAGATGCAGAAGAAAAACCTAAAGCTAGA
GGGAGAGGACGTAAAGTACAGCCCAAGGCAGAAGACGTTCAAGATAATGATGAAGTAGAA
GTTAAACCTAAAGGTAGAAAGAAGGCTCAACCAAAAGTAGTTGAAAAAGTACAGAAAGCT
GATGATGAAGATGATGAACAAGAAGAAATACCAGATGAAGAAGCTGAAGAAGAGAAGCCA
GTTGAAGAAGTAAAGAAGAAAGGTCGGAAGAATGCTGACAAAAAGACAACACAGAAAGAA
GACTCCGAACAAAAAGATGATGAAGTTAAAGAACAAATGCCAGTCAGCAAAAGTCGGAAG
GGTGCTAAGAAAGATGAAAAAGCAAAAGGAGACACAAAAGACGATGATAAAGATGATGTA
GCAGAATCCAAACCGGTTAAAGGGAAACGTGGTCAAAAGAAAGCTGAAGCCAGCGAGCTA
CAAGATACGGGGGAACCGATAAACAAACGTCGCCGTAAAGATGACAAGGCCACCGAGGAC
AATAAAAAGAAAACTAAAGCCGCAACGGACTATGAATCTATTGATTTCTCTAACAAATCA
CAGACGTCTCAGGGTAAAGAGTGGAATTTTAAAATAGCCAATTGGAACGTGGACGGCATT
AGGGCTTGGATGGGAAAAGGCGGATTGGACTACCTTAAATACGAAAAACCGGATATATTG
TGTCTACAGGAAACGAAATGCGCTCTAGATAAATTGCCGTACGAAGTGAAAAATATACCC
GGATATCACGCGTACTGGCTGTCTAGTGATAAAGATGGCTACGCCGGCGTAGGAATTTAC
ACTACAAAGTTAGCTATGAATGTACAATACGGTTTACAAAACGAGGAATTGGATTCCGAA
GGTCGGATAATAACGGCTGAGTACGAACAATTCTACTTAATATGCACGTACGTACCTAAC
GCGGGACGAAAATTAGTTTCACTGCCCAAGAGATTAAAGTGGAACGACGAGTTCAGGGAA
CACGTTAAGGCGCTGGACGAAAAGAAACCTGTCATTATATGCGGTGACATGAACGTGGCT
CACAACGAAATAGATCTAACGAATCCAAAAACGAATAAGAAGAACGCCGGCTTCACGGAG
GAGGAACGAGCTGGTATGACGGAGCTGCTCGGGGACGGATTCGTAGACACGTTCAGACAT
TTTCATCCTGAGAAAGTCGCTTATACGTTCTGGAGTTACATGGCCAATAGTAGAGCTAAG
AACGTCGGATGGCGTTTGGACTACTTCATCGTGTCAGAGAGACTTTTACCGTCTATATGC
GACAGTTCGATCCGCGGCGAGGTGTATGGGAGTGACCACTGTCCTATAGCACTCTACCTA
CACTTAACGAGCGCCGACAAACCCAAGGAATAG
Protein sequence:
MAPRTAKAKKNADVKVSEGEVPKKGRGKAKNVTEQEQVVPEVVIDKNPSVEKKTKRGKNA
VVENNDEAQIIVKDAPPAKKGRKKAVEEPIPESNSLNGDNSDENEPAVQSDDNEQNEEHS
ESNDNAEDTQASAGKGRKKVNKKEPIEKEVKPKETGRGKKNVKQENITAKKDAEEKPKAR
GRGRKVQPKAEDVQDNDEVEVKPKGRKKAQPKVVEKVQKADDEDDEQEEIPDEEAEEEKP
VEEVKKKGRKNADKKTTQKEDSEQKDDEVKEQMPVSKSRKGAKKDEKAKGDTKDDDKDDV
AESKPVKGKRGQKKAEASELQDTGEPINKRRRKDDKATEDNKKKTKAATDYESIDFSNKS
QTSQGKEWNFKIANWNVDGIRAWMGKGGLDYLKYEKPDILCLQETKCALDKLPYEVKNIP
GYHAYWLSSDKDGYAGVGIYTTKLAMNVQYGLQNEELDSEGRIITAEYEQFYLICTYVPN
AGRKLVSLPKRLKWNDEFREHVKALDEKKPVIICGDMNVAHNEIDLTNPKTNKKNAGFTE
EERAGMTELLGDGFVDTFRHFHPEKVAYTFWSYMANSRAKNVGWRLDYFIVSERLLPSIC
DSSIRGEVYGSDHCPIALYLHLTSADKPKE