| New model in OGS2.0 | DPOGS204135 |
|---|---|
| Genomic Position | scaffold1311:- 21734-27340 |
| See gene structure | |
| CDS Length | 1470 |
| Paired RNAseq reads | 73 |
| Single RNAseq reads | 240 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013617 (7e-53) |
| Best Drosophila hit | I[[h]] channel, isoform B (2e-09) |
| Best Human hit | potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 (4e-12) |
| Best NR hit (blastp) | cadherin-like protein [Pectinophora gossypiella] (2e-63) |
| Best NR hit (blastx) | cadherin-like protein [Pectinophora gossypiella] (3e-59) |
| GeneOntology terms | GO:0005242 inward rectifier potassium channel activity GO:0016020 membrane GO:0030551 cyclic nucleotide binding GO:0005267 potassium channel activity GO:0009860 pollen tube growth |
| InterPro families | IPR013621 Ion transport N-terminal |
| Orthology group | MCL17706 |
Nucleotide sequence:
ATGACATGTAACATTGACCAAGTGTTGCCGGCGACGGATGAGGCAGGATCTACCAGGGAC
AACGTCACTGAAGTACGCGCACACTTCATAAAAGATGACGTACCTGCTGAGGCTAGCGTC
ATTGAGGCGCTCCGCGGGGACATATCGCGTCTGCGTTTGATCCAAGGAACGTTGATCTCC
AAAGAGTTGGTGCTGCAAGACCTGGTGACAGACATCAGCCCCTCAGAGCTGGCGGATGGA
CGTGCTCTGCTTTACACCTTAGCAGCAGTAGCCGGTGTGATGACGATTCTTCTACTGGTC
ACTATTGTGGTCTACTTCTGGAGGACCAGAGTACTCAACCGTCGCCTGCAAGCGCTGTCG
ATGACCAAGTACGGCTCCCAGGACTCTGGACTGAATCGTTTGGGTCTAGCGGCGCCGGGA
ACTAATAAACATGCGGTGGAAGGATCCAACCCCATATGGAATGAATCTATCAAGGCGCCC
GACTTCGATGCCCTCAGTGAGACGTCTGATGATTCCGATCTAATCGGTATCGAGAACCTG
GAACAGTTCCGAGACGATTACTTCCCCCCGGTCGGTTCGGACTCGGCGGAGGGAGTTACA
AACACAGTAAGTACCGTCTCCTATTCGAGCAGCTTCCTACCAAAGAAAGGTGCCTTATGG
TCGAGGTTGAAGCGTTTCTTGAAAAAACTGTCCCTCGTATCATTCGGGCACCCCGACACC
TTTGAGCACTTCCGCAGCTACTCCACTGTTGTGGCTGAACAGCAGCGCCAGATCCTCGAA
GGCGGAAATTACATAATTCATCCATTCAGCCAAATTAGTTTGTATTGGAACAGTACAATA
GCTATAGTGAACTTAATGCACATGATTGTGTCTACCTTCCGTCTGTGTTATATTCTGGAA
CCTGTCCAGCCGTCAATGCACTGGCTTGACGAGGTTCTTCTTGTCCTTCACGGCATTTGC
TTCTTCGATATCTTCATGAAGTTTAACGTTGGTTTCAAAGAAGAATATTTTGCAAACGTC
GTGTTCGACAGGCGAAGAATTGCTGCCCAATATCTTCGGTGTTGGTTCCTGATCGACCTA
ATATCATGTCTTCCGATCGCGTACGTTATGCTTTACCTCAAATTTGAAAAAAGTCGATAT
ATTCTATTCGCTCACGTGCTGCCCATCTTGAGAGCAACTAGACTTCGGAAAGCTTTGAAT
GACGTCGTGACTATAACAAAAGTTTTATCAGAATATTATATAATGCGTCACACGGTTCAT
CACCTTCTGTTATTCCTTGTCACTATGCATTGGTCATGTTGTATTGTCTACAGCGCGCCC
ATTTTCGCCTATTATTGGGATGGTCAAATGGCTAAAGGATATAACGCCTTTTTTTTGAAC
TCCACGGACGGTGATTTATCAAAATTTCCGGAATCATACAGATATCACAAGGCTCTGTTC
CTTAGTCTATCTTCGTTTTTTGGTAAGTGA
Protein sequence:
MTCNIDQVLPATDEAGSTRDNVTEVRAHFIKDDVPAEASVIEALRGDISRLRLIQGTLIS
KELVLQDLVTDISPSELADGRALLYTLAAVAGVMTILLLVTIVVYFWRTRVLNRRLQALS
MTKYGSQDSGLNRLGLAAPGTNKHAVEGSNPIWNESIKAPDFDALSETSDDSDLIGIENL
EQFRDDYFPPVGSDSAEGVTNTVSTVSYSSSFLPKKGALWSRLKRFLKKLSLVSFGHPDT
FEHFRSYSTVVAEQQRQILEGGNYIIHPFSQISLYWNSTIAIVNLMHMIVSTFRLCYILE
PVQPSMHWLDEVLLVLHGICFFDIFMKFNVGFKEEYFANVVFDRRRIAAQYLRCWFLIDL
ISCLPIAYVMLYLKFEKSRYILFAHVLPILRATRLRKALNDVVTITKVLSEYYIMRHTVH
HLLLFLVTMHWSCCIVYSAPIFAYYWDGQMAKGYNAFFLNSTDGDLSKFPESYRYHKALF
LSLSSFFGK