| New model in OGS2.0 | DPOGS201928 |
|---|---|
| Genomic Position | scaffold2587:- 21064-40308 |
| See gene structure | |
| CDS Length | 2514 |
| Paired RNAseq reads | 10195 |
| Single RNAseq reads | 24161 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002661 (0.0) |
| Best Drosophila hit | LpR1, isoform D (0.0) |
| Best Human hit | very low-density lipoprotein receptor isoform a precursor (1e-154) |
| Best NR hit (blastp) | lipophorin receptor [Galleria mellonella] (0.0) |
| Best NR hit (blastx) | lipophorin receptor [Galleria mellonella] (0.0) |
| GeneOntology terms | GO:0005041 low-density lipoprotein receptor activity GO:0005509 calcium ion binding GO:0016020 membrane |
| InterPro families | IPR000742 Epidermal growth factor-like, type 3 IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR000033 LDLR class B repeat IPR000152 EGF-type aspartate/asparagine hydroxylation site IPR013032 EGF-like region, conserved site IPR018097 EGF-like calcium-binding, conserved site IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site IPR011042 Six-bladed beta-propeller, TolB-like IPR013091 EGF calcium-binding IPR006210 Epidermal growth factor-like IPR001881 EGF-like calcium-binding |
| Orthology group | MCL10821 |
Nucleotide sequence:
ATGTCGGAGCTGTACAGTTCCAAAACAGAGATAGAGTTAGCTATAGCGTCGCAGCGTAGT
TGTACTGGTCACAATTTTGTTTGTGCAACCGGGCATTGCATACCCGGGGCCTGGCGTTGC
GATGACACCCCGGATTGCCCTGATGGCTCTGATGAGCATCATTGTGAGGTGGAGTCATGC
GGCCCAGAGGAATTCACATGCAGAGGAAAACGTGGAGAATGCGTCCCATTGACTTGGATG
TGTGACGATAACGTTGATTGCTCAGATGGTTCTGACGAGAAAGCATGCAATGAAACTTGC
CGGTCCGATGAGTTTACATGTGGAAATGGTAAATGTATACAACAAAGATGGGTTTGTGAT
GGTGATGACGACTGTGGTGATGGAAGCGATGAGGTCAAGTGTCCAGCACCGACCTGCCAA
CCCCACAGCCACTTCTCCTGTGCTGACGGACATTGTGTCACAGCTAGATGGCGCTGCGAC
GGTGACATTGATTGCCCTGATGGTAGTGATGAAATGGGCTGCGCGACAACACCTAAAATA
ACATCCCCGTGTATAGCGACTGAGTTTGAATGTCGTGACCGCATCACATGTGTTCACCGA
GCTTGGGTCTGCGATGGTGATAAGGATTGTGCTGACGGCGGTGATGAAGCTCCTGAGCTT
TGCCGCGGGAACGTCACTTGCAGACTAGATCAGTTCACATGCAAAGACCACAGCTGCATA
CCAGGAGCACTGTACTGCAACGGAGATAAAGACTGCCCGGATGGTAGCGACGAAGTTAAC
TGCACTAAACCAAAACACGTGTGCGACAAAAAGACAGAATTCGATTGTGGCGGCGGTATG
TGCATACCCTTATCTAAGGTCTGCGACAAACGACCGGACTGTCCCAATTTTGAAGACGAA
CCTCGTGATAGATGTGGGGAAGATGAATGTGCCGTAAACAATGGAGGCTGTACACAAAAG
TGTGTGGACACCCCAGTGGGGTACTACTGCGACTGTGAGAAAGGATACAAACTGTCTGAT
AACAGGACTTGCGAAGACATCGACGAATGTCTGGATCCGGGAGCGTGTTCCCAAATATGC
ACCAACGAGAAAGGCACCTTCAAATGCGAATGTCACCCCGGCTACGCGAGGGACCCTCGT
GATAGGACCCGCTGCAAGGCCACCGAGGGTCATCCGTCACTGTTGTTCGCGAGACGCTTC
GACATCAGGAAGATCAGCTTGGACCATCATGAGATGGTCGCCATAGTGAACGACACCAAG
TCGGCCACAGCCCTCGACTACGTTTTCAGAACCGGAATGATCTTCTGGAGTGACGTCATC
GATGAGAAAATTTACAAGGCCCCAATAGACGAAGGTAGCCAACGCACGGTGGTGATAGGA
GATCAGCTGATCACATCCGATGGTCTCGCTGTCGACTGGATCTACAACCACCTGTATTGG
ACAGATACTGGCAAGAACCACATCGAGCTGGCCGACCTTCAAGGAAACATGAGGAAGATA
CTCATCAGAGACAAGCTCGAAGAACCGAGAGCCATAGCTCTAAACCCCCTGGATGGATGG
ATGTATTGGACCGATTGGGGCCAGGTTCCTAAGATCGAACGCGCTGGTATGGACGGATCC
CATAGACAGACCATCGTCTCCTATGACGTCAAATGGCCCAACGGTCTCACTCTCGACCTC
GTCCGGAAACGCGTATACTGGGTGGATGCGAAGGTGAACACAATATCGTCATGCAACTAC
GACGGCTCGGGTCGGCGCGTGGTGTTGTACTCCAGCGAGGTGCTCCGCCACCCCTTCAGC
ATCACCACCTTCGAGGACTGGGTCTACTGGACCGACTGGGACAAGACCGCCGTCTACCGC
GCCAACAAGTTCAATGGAAAAGATATTGAAGCTATCACTTCAACTCATACGCTTCAAAAC
CCAATGGTGATCCACGTGTACCATCCGTACCGTCAGCCGGATGGTGTCAACTACTGCGCC
GCTGTCAACGGTCACTGTTCTCACCTCTGTCTCCCAGCCCCAAAGATCGGTTCCAATTCA
CCGCGAGTCTCCTGCGCCTGCCCCAACGGCCTCCGACTCCTTCCCGACAACCAGATGTGC
GTCGAGGACAATTCAGTAAGACCTGATGTGGAGGTGCATAAACCAAGTAATGATTCAAAG
AAACTTAATATAGTTGAGGAAAATTCTAAGCCAAGTGTGCCTGAAACTCCTAAAGTAGGT
TCTGGAATCTCAAACGGCGGCCGCGACGCGAGCGTGGTGGCCGGCATCGTTGTATCTGTA
ATCTCAGGAATAATTATACTCGCTGCTTTGATCGCGGTTGTAATGTACCGGCATTACGTC
CATCGTAATGTCACATCAATGAACTTCGACAATCCGGTCTACCGCAAAACGACTGAGAAT
CAATTCTCATTGGAACAAAATGGCTACGCACCGGGCGGCAAATTGTATCCCAGCACCGTC
GGCGAAGAGGCCCAGGAACCACTCAATACACCTGGTACAAATGACTTTGTATAG
Protein sequence:
MSELYSSKTEIELAIASQRSCTGHNFVCATGHCIPGAWRCDDTPDCPDGSDEHHCEVESC
GPEEFTCRGKRGECVPLTWMCDDNVDCSDGSDEKACNETCRSDEFTCGNGKCIQQRWVCD
GDDDCGDGSDEVKCPAPTCQPHSHFSCADGHCVTARWRCDGDIDCPDGSDEMGCATTPKI
TSPCIATEFECRDRITCVHRAWVCDGDKDCADGGDEAPELCRGNVTCRLDQFTCKDHSCI
PGALYCNGDKDCPDGSDEVNCTKPKHVCDKKTEFDCGGGMCIPLSKVCDKRPDCPNFEDE
PRDRCGEDECAVNNGGCTQKCVDTPVGYYCDCEKGYKLSDNRTCEDIDECLDPGACSQIC
TNEKGTFKCECHPGYARDPRDRTRCKATEGHPSLLFARRFDIRKISLDHHEMVAIVNDTK
SATALDYVFRTGMIFWSDVIDEKIYKAPIDEGSQRTVVIGDQLITSDGLAVDWIYNHLYW
TDTGKNHIELADLQGNMRKILIRDKLEEPRAIALNPLDGWMYWTDWGQVPKIERAGMDGS
HRQTIVSYDVKWPNGLTLDLVRKRVYWVDAKVNTISSCNYDGSGRRVVLYSSEVLRHPFS
ITTFEDWVYWTDWDKTAVYRANKFNGKDIEAITSTHTLQNPMVIHVYHPYRQPDGVNYCA
AVNGHCSHLCLPAPKIGSNSPRVSCACPNGLRLLPDNQMCVEDNSVRPDVEVHKPSNDSK
KLNIVEENSKPSVPETPKVGSGISNGGRDASVVAGIVVSVISGIIILAALIAVVMYRHYV
HRNVTSMNFDNPVYRKTTENQFSLEQNGYAPGGKLYPSTVGEEAQEPLNTPGTNDFV