| Genomic Position | scaffold7074:- 394-3084 |
|---|---|
| See gene structure | |
| CDS Length | 2691 |
| Paired RNAseq reads | 34 |
| Single RNAseq reads | 87 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001404 (4e-11) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | PREDICTED: similar to endonuclease and reverse transcriptase-like protein [Acyrthosiphon pisum] (2e-136) |
| Best NR hit (blastx) | PREDICTED: similar to endonuclease and reverse transcriptase-like protein [Acyrthosiphon pisum] (3e-123) |
| GeneOntology terms | GO:0006278 RNA-dependent DNA replication GO:0003964 RNA-directed DNA polymerase activity GO:0003723 RNA binding |
| InterPro families | IPR000477 Reverse transcriptase IPR005135 Endonuclease/exonuclease/phosphatase |
| Orthology group | MCL10070 |
Nucleotide sequence:
ATGCTGAAGATGATACAGTGGAACGCCGACGGTCTTAGCCGTCCGAAGCAGAAGCTCCTA
CGGATGCTCCTCTCCGAGTACAAAATCGACATCGCCCTCATCTCAGAGACCCATCTCAGG
CCATCGGATTCCCTGAAGTTGCCTGGATTCGTGATCTACCGGAGTGATCAGATATCTCCC
GCCGGGGTAGCCTACAGGGGCTTGGCTGCTCTGGTAAAACGACAAGTCATCCACCAGCCG
CTACCGGCAGTATCCCTCCGCTCAGCATATGCCCTAGGCGTAGAGGTGTGTCTTGACCGT
CGTCCCGTCCGTGTGTTTGCCTTTTATAAGCCGCCGCTCGCTCGCTTGGAGGAGAACGAC
ATCCACGTCCTCTTAAACCAGGCGACCCCCACCATCATCGCCGGCGACTTCAACTGCAAG
CACACGGCATGGAACTCTACACATGATGACCCCAACGGAATCAGGCTATTCACCGACGCG
GAGGCGGAAGGGTATGTAGTACTAGGACCGGAGGTTCCAACGCACTACCCCTACCAGCAG
ACCGCCGTGCCTGACGTTATCGACCTTACGATCGCACATGGTCTGAACACAGACCCCTCG
ATCGACGTCCTGGACGACCATATGATATCAGACCACCAACCAGTCATGATGACCCTAGAC
CTGACCCCTATCCGGACTGGGTTTCCCGCCCCTCGACAAAGGCAGGACTGGAGAAAGTTC
GCCGACCATCTGACCGAACACTTGAGGTCCTTCCCCCTGAACAATCCCGACGATGTAGAC
CGCCTGGCCAACGAGCTCACCGCCTCAATCACTCGGGCGCTTGAGGTCTCGCGGCTGTGC
ACTACATCTCACCGGAAAAAACCGCAACTGCCTGCCAAGATCCGCACAATGATAGAGGAG
AAGAGGAGGCTAAGGAGGGAATATCAGCGCACTCGATGCCCCACCACGAAATCCCAACTA
AACGCTCTGGCAGCCAGAGTCTCAGCCGTGCTGGAGGACCACGCGGTGGACTCCTGGTAC
AGGGCCATAGAGCAAGCTGGGGAAGACTGGATGGGCATCCACCGCATTTGCCGCCAAGTA
GCCAAGAAGCCTGTCCCGATCCGGCCCTTGCTCGCGCGAGATGGCACTCCACGCTACCGC
GCGGCGGACCGAGCGGAGATCTTCGCCGATCACCTAGAGACCCAATTCCAGCCAAACCCC
TCTGGGAACACGCAGCATGCAGAGGAAGTTCAACAGCTGCTGAGGAGCTACCTTGGGCAG
TCGATAGCCCCAGAGGAAAATCCCATCGTCCTCACCCCTGGCCAAGTGCAGCGTACGATC
CGCCGCACAAAGCTTCGGAAGGCCCCCGGTCCTGACGGAATCACTAACGAAGCCCTTCGT
CACCTTCCCGCGCGTGGCGTAGCAGCGGTGACACGCTTGTACAATGGAGTCCTCAGGACC
GGCCACTTCCCTACCCAGTGGAAGCTCGGACGAATCATCATGCTGCCGAAACCAGGGAAA
AACATCTTGCTGCCAGGGAGCTATCGCCCCATCACGCTCCTGTCAACCATCTCAAAGGTC
TTCGAAAAACTGCTGCTGCTGCACCTAGCACCACATATCCAGCCACGCGACGAACAGTTT
GGCTTCAGAGCGGAGCATTCCACCACGCTTCAGCTCGCGAGGGTCCTGCACGCTCTGTCG
GTGGCTCTAAACAAGAACGAGTCAGCCGTCGCAGTGATGCTCGACATGGAGAAAGCTTTC
GACCGCGTATGGCACCCCGGCCTACTGTACAAGCTGGCCACATCCACTACTCCTCGCCGA
ATAGTCAGGATCGTGGCCACCTTCCTACAAGATAGGCGATTCCAGGTGTCGGTGGAAGGC
ACCTTATCTACGCAACGCCCCATTAGAGCCGGAGTGCCGCAGGGGAGCTGCCTGTCTCCG
ATATGCTACTCTAAGTACACGGACGACATCCCAGTGGCGGAAGGCGCAACCTTAGCGCTC
TACGCCGACGATGCTGCCTATATTACTACATCCTTGACTCCCGCCCACGCGGCGACAAAA
ATGCAGCGTCAGCTGGACCAGCTCCCTCAATGGCTGGATAAGTGGCGTCTCAGAGTAAAC
GTTTCGAAGACCCAAGCGATCTCCATGGGACGACGACACCCACCACAGCCCCCCTCCCTG
ATGGGACAACCCCTCCAATGGGCACGGACGGTCAAGTACCTGGGCGTGACCATCGACCGT
GGCCTATCAATGAAACAACATACGAAGGAAGTCGTTGAGAAATCGCGAGCCGCGCGTGCT
CTCCTGCGACCCGTTCTCCGATCCGATCTCCCCCTCCGAGCCAAGCTGGCCGTCTACAAG
ACATACATAAGATCGCACCTAACATACGCCGCTCCCGCCTGGTATGCCTTAGTCAAGGAA
CCAGAGCGTGGACGCCTGCGCGCCCAGCAATCACTAGTGCTGAGGACTCTTGTAGACGCG
CCGTGGTGCGTTCGGAACGCGACCATCGCCAGAGACCTACACATGGAGAGCCTCGACGAC
TTCATAACTCGACTGAGTCGGGCCATGTTTCAGCGCGCCGACGCGTCGACCTTCGCACAC
ATACGCGAAGTGGCCCCGTATCACAGACGCCCGCCAGACGGACACGCCCTGCCGCGAGAT
CTTCTTCCCGCGGCCCTACCCGGACTTACCCCACACAAACATCCGCCGTAA
Protein sequence:
MLKMIQWNADGLSRPKQKLLRMLLSEYKIDIALISETHLRPSDSLKLPGFVIYRSDQISP
AGVAYRGLAALVKRQVIHQPLPAVSLRSAYALGVEVCLDRRPVRVFAFYKPPLARLEEND
IHVLLNQATPTIIAGDFNCKHTAWNSTHDDPNGIRLFTDAEAEGYVVLGPEVPTHYPYQQ
TAVPDVIDLTIAHGLNTDPSIDVLDDHMISDHQPVMMTLDLTPIRTGFPAPRQRQDWRKF
ADHLTEHLRSFPLNNPDDVDRLANELTASITRALEVSRLCTTSHRKKPQLPAKIRTMIEE
KRRLRREYQRTRCPTTKSQLNALAARVSAVLEDHAVDSWYRAIEQAGEDWMGIHRICRQV
AKKPVPIRPLLARDGTPRYRAADRAEIFADHLETQFQPNPSGNTQHAEEVQQLLRSYLGQ
SIAPEENPIVLTPGQVQRTIRRTKLRKAPGPDGITNEALRHLPARGVAAVTRLYNGVLRT
GHFPTQWKLGRIIMLPKPGKNILLPGSYRPITLLSTISKVFEKLLLLHLAPHIQPRDEQF
GFRAEHSTTLQLARVLHALSVALNKNESAVAVMLDMEKAFDRVWHPGLLYKLATSTTPRR
IVRIVATFLQDRRFQVSVEGTLSTQRPIRAGVPQGSCLSPICYSKYTDDIPVAEGATLAL
YADDAAYITTSLTPAHAATKMQRQLDQLPQWLDKWRLRVNVSKTQAISMGRRHPPQPPSL
MGQPLQWARTVKYLGVTIDRGLSMKQHTKEVVEKSRAARALLRPVLRSDLPLRAKLAVYK
TYIRSHLTYAAPAWYALVKEPERGRLRAQQSLVLRTLVDAPWCVRNATIARDLHMESLDD
FITRLSRAMFQRADASTFAHIREVAPYHRRPPDGHALPRDLLPAALPGLTPHKHPP