| New model in OGS2.0 | DPOGS202511 |
|---|---|
| Genomic Position | scaffold563:- 61498-62187 |
| See gene structure | |
| CDS Length | 690 |
| Paired RNAseq reads | 27279 |
| Single RNAseq reads | 93005 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001415 (2e-120) |
| Best Drosophila hit | Ubiquitin-63E, isoform A (3e-122) |
| Best Human hit | polyubiquitin-C (2e-122) |
| Best NR hit (blastp) | putative ubiquitin C variant 2 [Taeniopygia guttata] (2e-126) |
| Best NR hit (blastx) | RecName: Full=Polyubiquitin-C; Contains: RecName: Full=Ubiquitin-related; Contains: RecName: Full=Ubiquitin; Flags: Precursor (8e-119) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0005634 nucleus |
| InterPro families | IPR000626 Ubiquitin IPR019954 Ubiquitin conserved site IPR019955 Ubiquitin supergroup IPR019956 Ubiquitin subgroup |
| Orthology group | ND |
Nucleotide sequence:
ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC
GACACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG
CAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAAC
ATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGGATGCAAATCTTT
GTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGACACGATCGAG
AATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGACTTATC
TTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATTCAAAAGGAA
TCAACCCTGCACTTGGTACTAAGATTGAGAGGAGGGATGCAAATCTTTGTAAAAACATTA
ACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGACACGATCGAGAATGTTAAAGCT
AAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGACTTATCTTTGCCGGCAAG
CAGTTAGAAGATGGACGCACCCTGTCTGATTATAACATTCAAAAGGAATCAACCCTGCAC
TTAGTACTAAGATTGCGAGGGGGAGTCTAA
Protein sequence:
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV