| New model in OGS2.0 | DPOGS212378 |
|---|---|
| Genomic Position | scaffold101:+ 316632-321083 |
| See gene structure | |
| CDS Length | 1233 |
| Paired RNAseq reads | 530 |
| Single RNAseq reads | 1539 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004648 (1e-38) |
| Best Drosophila hit | CG6171, isoform B (3e-08) |
| Best Human hit | aprataxin and PNK-like factor (1e-14) |
| Best NR hit (blastp) | conserved hypothetical protein [Culex quinquefasciatus] (5e-18) |
| Best NR hit (blastx) | PREDICTED: aprataxin and PNK-like factor-like [Macaca mulatta] (2e-27) |
| GeneOntology terms | GO:0005634 nucleus GO:0005515 protein binding GO:0000012 single strand break repair GO:0046872 metal ion binding GO:0000166 nucleotide binding GO:0004520 endodeoxyribonuclease activity GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity GO:0006302 double-strand break repair GO:0006974 response to DNA damage stimulus GO:0005737 cytoplasm GO:0005829 cytosol GO:0008408 3'-5' exonuclease activity GO:0016829 lyase activity |
| InterPro families | IPR019406 Zinc finger, C2H2, APLF-like IPR000253 Forkhead-associated (FHA) domain IPR008984 SMAD/FHA domain |
| Orthology group | MCL19502 |
Nucleotide sequence:
ATGACTATAAAATTAGTTCGTACGGATACAATATCTCCTTGCAAAATAAATCTTCCCAAA
GGTGAACATGTTTTTGGTAGAGGAAAACTACTTGATTGTAACGATAAAAGGATATCACGA
GAACACGGTCAGATTATCGTTTCTGATGACTCATTGACAATTAAATCTCTACATCTAAAT
CCTTGCTTTTTTCAAAAGAAGCAATCCACACAAACTGAGATTCTTAAACTAAATAACACC
ACAGTTCTAAACAATGGTGACAGATTTGGCTTATTACCTGACTCATATTGGTTTGAAATA
CTTGTGTGTTATGATGAGAGTAAACATTGTACCGAAGCTAACTCTGAAAATGACACTGAA
GAGTTGTGCTTGGAACAAGGTGGATGTGAAACAAGGAGTGAAGTAAAAAATGTACAGCCT
AATATAAATCTGAGTGGTGACAATGAAGATACCAATGTTAGACCTGAATCACCGTCTCTA
TTAGCAAACACAGACAATGGAGTAGGTGCACCAAACAACTGTGTATCCCCGAGTGAGGGG
AGTGGTTTAGCAGAGCAGTTGCACGGGTCAGATGATACACAGTTGGTGACACAGAAAGTG
GAAGATTTCAAACAATCACCGAGTAAAAGGCCACACAGTCTGGACAATAGTGAAGCAAAG
AAAATAAAAACTGAAGAAAATACTGAAGATGAACCAAATATGAAAACTGAACAAACAGTA
AAAGATGAACCTGCAATCCCTGAGGATAATACGGAACCAGGTGTCAAACCAGGCTGCAGT
ACAGATGATACGCAACCAGCTCAGTGTGATGATAAACAAGGGCCAGTCAAACCTGCAAAG
CCAAGGGAAAGATGCATGTTTGGTGCACAATGTTACAGGCGGAACCCAACCCACTTGGAG
CAGTACAGTCACCCGCAGGATGCCGACTGGGGCGTAGGTGCGCGAGGAGTCTGTCCTTAT
GGGGCCGCCTGCAGGAGACGGAACCTCATGCACTGGAGCACCAACGACCATCCACCAGGG
GTCCTGCCACCGCCACGACCAGGGAAACGAAGGCCGAAGGCACCTGACGAGGATGATGTG
CCACAAGATCTGCCCAGCAAAAGGGTTCGGAAACCGGTTCCTAGACCTGACTGGGTCGGT
TCAGACTCCGAGCCTGAAGATCCATACGGAACAGATGAATCTGACGAGTGGAAACCCGAT
AGTAATACCAATTATTCAGATGATTATATATAA
Protein sequence:
MTIKLVRTDTISPCKINLPKGEHVFGRGKLLDCNDKRISREHGQIIVSDDSLTIKSLHLN
PCFFQKKQSTQTEILKLNNTTVLNNGDRFGLLPDSYWFEILVCYDESKHCTEANSENDTE
ELCLEQGGCETRSEVKNVQPNINLSGDNEDTNVRPESPSLLANTDNGVGAPNNCVSPSEG
SGLAEQLHGSDDTQLVTQKVEDFKQSPSKRPHSLDNSEAKKIKTEENTEDEPNMKTEQTV
KDEPAIPEDNTEPGVKPGCSTDDTQPAQCDDKQGPVKPAKPRERCMFGAQCYRRNPTHLE
QYSHPQDADWGVGARGVCPYGAACRRRNLMHWSTNDHPPGVLPPPRPGKRRPKAPDEDDV
PQDLPSKRVRKPVPRPDWVGSDSEPEDPYGTDESDEWKPDSNTNYSDDYI