| New model in OGS2.0 | DPOGS210987 |
|---|---|
| Genomic Position | scaffold262:+ 137656-141131 |
| See gene structure | |
| CDS Length | 924 |
| Paired RNAseq reads | 590 |
| Single RNAseq reads | 1412 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007822 (4e-06) |
| Best Drosophila hit | heterogeneous nuclear ribonucleoprotein at 87F, isoform C (4e-67) |
| Best Human hit | heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 (6e-55) |
| Best NR hit (blastp) | heterogeneous nuclear ribonucleoprotein A1 [Bombyx mori] (7e-108) |
| Best NR hit (blastx) | heterogeneous nuclear ribonucleoprotein A1 [Bombyx mori] (6e-111) |
| GeneOntology terms | GO:0030529 ribonucleoprotein complex GO:0005703 polytene chromosome puff GO:0005654 nucleoplasm GO:0030530 heterogeneous nuclear ribonucleoprotein complex GO:0003729 mRNA binding GO:0000785 chromatin GO:0005634 nucleus GO:0035062 omega speckle GO:0000166 nucleotide binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0043565 sequence-specific DNA binding |
| InterPro families | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL10803 |
Nucleotide sequence:
ATGAAGCCAAGCGGCGGGGACGATGACTATGAGGGTGATGATTTTTTACAAGAGGAACCT
GAACATACAAGGAAGTTGTTTATTGGTGGACTAGATTATTGTACGACAGATACGTCACTG
AAAGAGTTTTATGAACAATGGGGGGATATTGTTGATGTTGTTGTTATGAAGGATCCACAG
ACCAAGAGGTCTCGCGGTTTCGGTTTTATAACTTATTCCCGGGCTCATATGGTAGATGAT
GCTCAGAAAAACAGACCTCACAAGATTGATGGAAGAATTGTAGAACCAAAGCGAGCTGTA
CCAAGAGAAGAGATCAAAAGGCCGGATGCAAGTGCAACAGTCAAGAAACTGTTTATTGGA
GGTATAAAACAAGATATTGAAGAGGAAGACTTGAGAGAATACTTCAGCAAATTTGGCGAA
ATTATTTCAGTGAGTTTAGTAACAGAAAAAGACACTGGAAAGAAAAGAGGCTTTGGATTT
ATTGAATTTGATGATTACGATCCAGTTGATAGAATATGCTTACAACCAAGCCACAAGGTT
AAAGGTCGTCGCTTGGATGTTAAAAAGGCTATATCAAAGACAGTGATGGCATCTAGTGGT
AGTAGGGGACGGAGTGGAAGATGGGGTAATAGACAATTACAGGATTGGAATACAGATGGC
GCCTTTGATTCAGGCTACGAGCAGGGTTGGAACAACCAGAATCCTTGGGATAATTCAGGC
AATTGGGGCAACCAGGGTTATGATCAAGGTTGGCAGGGCGACTTTGGGAGTGGATATCAA
CAAAACTATGGTGGAGGGCCAATGAGACCTAATTTTAGTAATACACGACAACAGCCCTAT
AATGCAGGTGGTGGCTACAACAGCGGCAATCCTTCCAACTTCAACAACTCTGGCAACACT
CCCAACAACTCTCGTCGTTTTTAA
Protein sequence:
MKPSGGDDDYEGDDFLQEEPEHTRKLFIGGLDYCTTDTSLKEFYEQWGDIVDVVVMKDPQ
TKRSRGFGFITYSRAHMVDDAQKNRPHKIDGRIVEPKRAVPREEIKRPDASATVKKLFIG
GIKQDIEEEDLREYFSKFGEIISVSLVTEKDTGKKRGFGFIEFDDYDPVDRICLQPSHKV
KGRRLDVKKAISKTVMASSGSRGRSGRWGNRQLQDWNTDGAFDSGYEQGWNNQNPWDNSG
NWGNQGYDQGWQGDFGSGYQQNYGGGPMRPNFSNTRQQPYNAGGGYNSGNPSNFNNSGNT
PNNSRRF