| New model in OGS2.0 | DPOGS207216 |
|---|---|
| Genomic Position | scaffold425:+ 175251-178533 |
| See gene structure | |
| CDS Length | 1344 |
| Paired RNAseq reads | 543 |
| Single RNAseq reads | 1707 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010710 (0.0) |
| Best Drosophila hit | polybromo (2e-84) |
| Best Human hit | protein polybromo-1 isoform 1 (9e-82) |
| Best NR hit (blastp) | PREDICTED: similar to polybromo-1 [Tribolium castaneum] (3e-135) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC000618 [Tribolium castaneum] (6e-122) |
| GeneOntology terms | GO:0003677 DNA binding GO:0008270 zinc ion binding GO:0005634 nucleus GO:0007305 vitelline membrane formation in chorion-containing eggshell GO:0007306 eggshell chorion assembly |
| InterPro families | IPR001487 Bromodomain IPR018359 Bromodomain, conserved site |
| Orthology group | MCL40555 |
Nucleotide sequence:
ATGAGTAAAAGGCGCCGTGCATCATCATGCGCGAGTCGAGGACCCGACGGTGATGATAGT
GATGATGGAGTCGAGCTGAGTAACCCTGGACCTCCGCCGTCCAGGAAAAAGAAAAAGATG
GAACCGAGTGAAATTTGCCAACAATTGTATGATATTATTCGGTCATATAAAAAGGAAGAC
GGGACTCTCTTGTGTGACTCTTTCATAAGAGCTCCCAAAAGGCGGCAAGAACCTCAGTAT
TATGAAGTAGTATCCCAACCAATTGATTTATTAAGGGTACAACAAAAGTTAAAAACAGAT
ACCTATGAAGATATAGAAGAATTGTCCGCTGATATAGAACTCCTAGTTAATAATGCTAAG
GCTTTCTACAAACCCGATTCAGAGGAATATAAAGATGCTACGGATCTATGGAAGCTTTAT
AATAAACATAGACAGACATTGGAAAATGGTGATGACATCAAAACTCCTAAACTATCAAGA
AATGGTTCATCAAGCAGGAGGTCTGACGTCGCCGAGGATACTTCGGAGACATCAACCAAC
AACGAGGAAGACAATGTGTTTGAGGAGCTCTTCAATGCTGTCATGACGGCAAATATAGGT
GGACGACCTCTTTATCCGCCGTTTCAGTTTCTGCCGTCGGAAAGGAGATATCCTGAATAT
TACAGCGTTATAGACAACCCCATAGACTTGAAAACCATAGCACAGAAGATCCAGGCCAGC
GAATATAACACCCTGAATGATCTGGAGAAGGATTTGTTACTCATGGTGTGGAATGCCTGC
CTGTTCAATGAACCAGGTTCACAGTTGTATAAAGACGCCAGGGCATTGAAAAAGGTTATA
CAAGCTCGGAAGCAGGAAATAGATCAGCACGGACGGAGCGGTCCGGCCAAGACCTCTGAA
CGTATCCGCAGTAAGCGTACGTCACGAGTGGGGCCCGTGCCCTCCAGTAGGGCTCTCGCC
GTCATGGAAGCTCCCGGTTCTGACACCGAACCGGATGTCAAGCATTCAGAAGACAGCGCT
GGTGATAGCGACGAAGATAAAACAGATAATGAAGATTCTCCTCAATGGAAGCTTCTGGAA
ACCGTGAGAAATCACTTGGGACCAAGCGGAACACCGATGGCGGATCCGTTCTGGAAGCTT
CCATCGCGTCGCGAATATCAAGACTACTACAAGGAAATAAAGAATCCGGTGTCTCTGAAT
CAGATCAAAAATAAAATCAGACGCGGGAGTTACGGCACACTGTCCGAGGTGGCCGGGGAC
ATGAACATCATGTTCGAGAACGCTAAGCAATACAATCTGCCTACATCCAGGCTCTACAAG
TACGCTGTGAAACTACAGAGGTGA
Protein sequence:
MSKRRRASSCASRGPDGDDSDDGVELSNPGPPPSRKKKKMEPSEICQQLYDIIRSYKKED
GTLLCDSFIRAPKRRQEPQYYEVVSQPIDLLRVQQKLKTDTYEDIEELSADIELLVNNAK
AFYKPDSEEYKDATDLWKLYNKHRQTLENGDDIKTPKLSRNGSSSRRSDVAEDTSETSTN
NEEDNVFEELFNAVMTANIGGRPLYPPFQFLPSERRYPEYYSVIDNPIDLKTIAQKIQAS
EYNTLNDLEKDLLLMVWNACLFNEPGSQLYKDARALKKVIQARKQEIDQHGRSGPAKTSE
RIRSKRTSRVGPVPSSRALAVMEAPGSDTEPDVKHSEDSAGDSDEDKTDNEDSPQWKLLE
TVRNHLGPSGTPMADPFWKLPSRREYQDYYKEIKNPVSLNQIKNKIRRGSYGTLSEVAGD
MNIMFENAKQYNLPTSRLYKYAVKLQR