| New model in OGS2.0 | DPOGS202263 |
|---|---|
| Genomic Position | scaffold490:- 77409-79272 |
| See gene structure | |
| CDS Length | 969 |
| Paired RNAseq reads | 276 |
| Single RNAseq reads | 919 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004913 (4e-138) |
| Best Drosophila hit | CG3756 (7e-101) |
| Best Human hit | DNA-directed RNA polymerases I and III subunit RPAC1 isoform 1 (2e-83) |
| Best NR hit (blastp) | DNA-directed RNA polymerase [Aedes aegypti] (6e-117) |
| Best NR hit (blastx) | DNA-directed RNA polymerase [Aedes aegypti] (2e-113) |
| GeneOntology terms | GO:0003899 DNA-directed RNA polymerase activity GO:0005666 DNA-directed RNA polymerase III complex GO:0006383 transcription from RNA polymerase III promoter GO:0005736 DNA-directed RNA polymerase I complex GO:0006360 transcription from RNA polymerase I promoter GO:0003677 DNA binding GO:0006350 transcription GO:0046983 protein dimerization activity GO:0005875 microtubule associated complex |
| InterPro families | IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type IPR011262 DNA-directed RNA polymerase, insert domain IPR011261 DNA-directed RNA polymerase, dimerisation IPR001514 DNA-directed RNA polymerase, 30-40kDa subunit, conserved site IPR009025 DNA-directed RNA polymerase, RBP11-like |
| Orthology group | MCL15731 |
Nucleotide sequence:
ATGCCGAAACTTGATGAGAAGCCCAGAGTTTTCTTAGAAGAATTTCGAGTTAAGAATGCA
CCTGACGATTATGGAATGGCAGACGAAAAATGGAATTTTAAGAAATTCACAAAGAAATTT
CGTATTGTTATAGTCCGTATGGATAGTACTGAAATGGAATTTGATTTGATTGGCATTCAA
CCTGCTTTTGCCAATGCTTTTCGAAGGCTCATGTTAAGTGAAGTACCCAGTATGGCAATT
GAAAAGGTGATGATAAAAAATAATACATCCATTATACAGGACGAAGTGCTTGCACATAGG
TTGGGGTTGATTCCACTAAAGGCAGACCCGCGGTTATTTGAATTTCGTCCTGAAAATGCT
GAAGAAGGGACTGAGTTTGACACTTTAGAGTTTTCATTAAAAATAAAATGCACAAATAAT
AAATATGGACCCAAAGACTCTTTCCGTGCTGAGGACTTGTATGAAAATCATAGCGTATAC
TCGTCTTCAATTAAATGGCATCCCATTGGAAATCAGGCGTCAATCCACAAGGAAGCTGAT
GTTGGTCCAGTGGATGATGACATCCTCATATCCAAGATGAGACCCGGCCATGAACTCGAT
ATGCATCTGGTTGTACATATTTTTGACACAACTGCCTCCTACCGCCTACTTCCTGAAGTA
ACTCTAACCCGTGAAGTGGATGGAAGTGAAGCGACCTTGCTACAGAGCTGCTTTTCACCT
GGAGTCATCGGCCTGGATTCTGATGGCAAAGCTTTTGTGAGGGACGCCAGATATGACAGC
TGCAGCAGAAATGCTTACAGATATGACTGTATAAAAGACGCCGTAATATTAAGTAGAATA
CGTGATCATTTTATATTTAATGTGGAGTCAGTGGGTGCCATGCCTCCGAATGTCATATTT
GTTGAAGCTGTTAAAATATTAAGAGATAAATGTAAAACATTACTGGATGAATTAAATAAT
TTTTCTTAA
Protein sequence:
MPKLDEKPRVFLEEFRVKNAPDDYGMADEKWNFKKFTKKFRIVIVRMDSTEMEFDLIGIQ
PAFANAFRRLMLSEVPSMAIEKVMIKNNTSIIQDEVLAHRLGLIPLKADPRLFEFRPENA
EEGTEFDTLEFSLKIKCTNNKYGPKDSFRAEDLYENHSVYSSSIKWHPIGNQASIHKEAD
VGPVDDDILISKMRPGHELDMHLVVHIFDTTASYRLLPEVTLTREVDGSEATLLQSCFSP
GVIGLDSDGKAFVRDARYDSCSRNAYRYDCIKDAVILSRIRDHFIFNVESVGAMPPNVIF
VEAVKILRDKCKTLLDELNNFS