| New model in OGS2.0 | DPOGS206596 |
|---|---|
| Genomic Position | scaffold5874:- 77-8908 |
| See gene structure | |
| CDS Length | 3384 |
| Paired RNAseq reads | 9017 |
| Single RNAseq reads | 20113 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011982 (1e-07) |
| Best Drosophila hit | CG42611, isoform A (2e-75) |
| Best Human hit | sortilin-related receptor preproprotein (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to sortilin-related receptor containing LDLR class A repeats preproprotein [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to sortilin-related receptor containing LDLR class A repeats preproprotein [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0034362 low-density lipoprotein particle GO:0006810 transport GO:0006897 endocytosis GO:0006629 lipid metabolic process GO:0006869 lipid transport GO:0016020 membrane GO:0004872 receptor activity GO:0007275 multicellular organismal development GO:0008202 steroid metabolic process GO:0016021 integral to membrane GO:0008203 cholesterol metabolic process GO:0005771 multivesicular body GO:0016477 cell migration GO:0043025 neuronal cell body |
| InterPro families | IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR000033 LDLR class B repeat IPR002860 BNR repeat IPR006581 VPS10 IPR011042 Six-bladed beta-propeller, TolB-like IPR009030 Growth factor, receptor |
| Orthology group | MCL15004 |
Nucleotide sequence:
ATGCACACAGAGAATCTGGCAAATTTGTACGTTTCAGAGATAAATAGAAATTTCACACAG
TACAATTTCGTGTTGAGCCTGGAACAGGTCCTGTGCTACTTCCCTGATGGTAACTGGAAG
GACAGTTGGCTAGAGGATGTCACAGAGGATCCATTCACTGACTTGTATCGTGTGGAAGGT
CTAAAGGGTATCTACATTGTGTCTAAGGTCAATTTCAAGTCGTTGTCCTTCAACATAGAA
CCAGAACATTTGATATCATTGATCACATTCGATCATGGTGTCACCTGGTCTCCGATTGTA
CCACCGTCCGAAGATGAGAATGGTAAACCGATGAATTGTTACAAAGAAAACTCATGCTCC
CTACATTTGTGTCAGAAATTCAGCCAGCTGTATCCAGTTACGAGCATACCCGGATATGTG
GTAGACACTGAATGGAGATCGGCGAGTATAATGAGTTCGAAATCAGCTCCAGGTATAATA
ATGGCTACGGGCGTGATCGGTAAATCACTGAAAGGTATCCCCGGAGTCTATATCAGTAGG
GACGCGGGGCTTACATGGAAGAGGATCTTGAAAGATTATTATTTCTTCAACTACGGGGAC
CACGGTGGCGTTTTGGTTGCCGTCAAATACTTCAAATCTAGAGGAGAAACTAGAAGAATA
TTGTATTCGACCAACGAAGGAATCGATTGGCAATCTCATCAGTTCAATGCTGATGACCTT
CGTATTTACGGACTTATGACTGAGCCTGGTGAGAACACAACGACTTTCACTATGTTCGGC
TCAGCGAACGAACAGCATCAGTGGATCATAATAACAATGGATTTGATAAACACTTTTGCA
CGCAACTGTACTGAGAGCGATTATAAATTCTGGTCGCCGTCACCACCTACGTCCCCAAAT
TCTTCGGTTTCTTGCGTTCTTGGCACAAGGGATACATTCCAGCGTAGACTTGCGCACACG
AATTGCCATAACGGTATAGACTACGACAGGCCCGTCAGGAAGGAGGTCTGCGAATGCAGC
AGACGGGACTATGAATGTGATTTTGGATTCATTTTATCTCATAACACGTGTGTTCGCAAT
CAAAGTTTGGTGGGCAACGATCCTTATGCCGAGGCATCGGATTGTCAGCCCGGACATTAC
TTCCAAAGAACTAAAGGATACAGAAAGATAGACGGCGATGTTTGTACTGTCTCGTATTAC
ATGCCTTACGAGCCGGAAATGGTCCCTTGTCCTTTGTCGGTGCCGACCGAATTCCTATGG
GTTGCTTTGAGAGATAAAATAGCTCGCATCGATTTGTCAAACAACACGACTGTCATTCCT
ATCAAAAACCAACAGAACATTGTCGCTATTGAGTTTGATATGAAGAACAACTGCATCTAC
TGGGCTGATATCGAGGTAGATAAAATCAGTCGCCAGTGTTTCGACAACGGTAACGTACAG
GAGATAGTGGTCGATACCGATTTAGCTAGCATAGAGGGTATGGCCTTGGATTGGATTTCT
AATGTGCTTTTCTTTGTTGACGGCATGCGGAAGAAAATAGAAGCTGTGAGAACAGATCTT
CAGAGCAGCGGCCGAATGAGGGCCACTATATTAGATTCTAAAGTTCTGTCCAAACCCCGT
GGTATTGCTGTTCATCCGAGAGCTGGTTATCTGTACTGGACGGACTGGGATCGGAAGAAT
CCATCAGTTTCTAGATCGAATCTCGACGGTTCCAACGTTACCAAGTTATTTACAAAGCCA
ATAGTCCAATGGCCGAATGGCATAACCATCGATCAAATGTCGGATAGAATTTATTGGGTA
GATGCTCTGGAGGATTACATAGCGAGTGCGGATCTCAATGGACAGTATTTCAGACGGATT
CTATGGAATGACGAGAAAGTGTCTCATCCATTCGCAGTAGCCGTGTTAAAACATAAGATG
TATTGGGACGATTGGAAAGCGAAGTCTATATTCACCGCGGACAAAGACACGGGAGCTGAT
ATAGTCACTATCAACGACAAGCTATCCGGCTTGATGGATCTAAAGGTGTTCGCGTATTTC
ATGCAACACGGAAGTAACGCCTGTTCATACAAGAATACGAGTTGCGATACTTTGTGCCTC
GGCGGTCCGAGGAATACTTTCAGCTGTCTTTGCCCAGACGGTTTTAAGAAAATAAACGGT
AAATGCATGTGTCCAAACGGTTTGGAGCCAACTCCGAATATGACGTGCCCCAAACAGGCC
GGATCTTGTTCACCGGAGGAGTTTTCTTGCAAGAACGGTAGATGCATTCGTAGCACGTGG
CGTTGTGATGGCAACGACGATTGTGGGGATGGATCCGACGAGGTTGGGTGTGGGTGCGCT
CCGCCCAGGATCGCCTGTGACGGCCGGTGCTACTTACCCCATTGGCGCTGTGACGGTGAC
ATGGATTGCGCTGATAACAGTGACGAGAAAGATTGCGGTAAACAAAACTGTACGGAGAAC
CAGTTCCAGTGTGCCAACGGGAATTGCATCGAGAAAAGATGGGTTTGCGACGGAGATAAC
GACTGCAAAGATGGCTCTGATGAACGGAATTGTACGCAAAGTCTACCAAAACGTCCGGTA
ACGGTCAACTGTTCCGGTCACGTGTTCGCTTGCTCTAATGACACAAACGCTCTTTGTATA
CCGAACTCATGGGTTTGTGATGGAGAGAGAGACTGTCTCGGTGGTGAGGATGAGACAGAG
GAGAGATGTACCAACTCCACCTGCGCCCCCTATATGTTCAGATGTCCTAGCGGAAAGTGC
ATTTATATGTCATGGGTTTGTGACGGCGAGAACGATTGCAGCGACGTAGATTCATCAGAC
GAGAAGAACTGTACCTCTATCGGCCACTCTAAGCTGATACCTCGACCTACGGAAAAACCA
GATTTCGGTACCAAAGGTTCCTGCTTAGAATGGATGTTCAAGTGCGACAACGGCGTCTGT
CTGCCGTATTGGTGGAGATGCGACGGCACCAACGACTGCGGCGATAACTCGGACGAGGCG
GCGTGTGGCCTGCGACCCGACAACAAGACACACATAACGCCGGAGCGGGAGGTCAAACAG
AAGTGCGCCAAGAACCAGTTTACCTGTGAACCCGGTGTGTGTATACCACTGACGTGGGTT
TGTGACTCCGTTAGTGATTGTATCGACGGATCCGACGAGTCGGGCTGCGATCGGAGACAC
GACAAAGGAGATACCGGTCTGCGGTGCGAGCCCGCGGCGACGCCGTGCGCTGACGGCTCG
GCCTGCATTGCCGACCACCAGCTGTGTGACGGAGTCATCGACTGTGGGGATCATAGTGAC
GAAATGCACTGCGGCACCGTAAGTCGCCGAATAGATAATCCAATACTTATTTTTCTATTT
AAAATTATATGCCGTGTATATTAA
Protein sequence:
MHTENLANLYVSEINRNFTQYNFVLSLEQVLCYFPDGNWKDSWLEDVTEDPFTDLYRVEG
LKGIYIVSKVNFKSLSFNIEPEHLISLITFDHGVTWSPIVPPSEDENGKPMNCYKENSCS
LHLCQKFSQLYPVTSIPGYVVDTEWRSASIMSSKSAPGIIMATGVIGKSLKGIPGVYISR
DAGLTWKRILKDYYFFNYGDHGGVLVAVKYFKSRGETRRILYSTNEGIDWQSHQFNADDL
RIYGLMTEPGENTTTFTMFGSANEQHQWIIITMDLINTFARNCTESDYKFWSPSPPTSPN
SSVSCVLGTRDTFQRRLAHTNCHNGIDYDRPVRKEVCECSRRDYECDFGFILSHNTCVRN
QSLVGNDPYAEASDCQPGHYFQRTKGYRKIDGDVCTVSYYMPYEPEMVPCPLSVPTEFLW
VALRDKIARIDLSNNTTVIPIKNQQNIVAIEFDMKNNCIYWADIEVDKISRQCFDNGNVQ
EIVVDTDLASIEGMALDWISNVLFFVDGMRKKIEAVRTDLQSSGRMRATILDSKVLSKPR
GIAVHPRAGYLYWTDWDRKNPSVSRSNLDGSNVTKLFTKPIVQWPNGITIDQMSDRIYWV
DALEDYIASADLNGQYFRRILWNDEKVSHPFAVAVLKHKMYWDDWKAKSIFTADKDTGAD
IVTINDKLSGLMDLKVFAYFMQHGSNACSYKNTSCDTLCLGGPRNTFSCLCPDGFKKING
KCMCPNGLEPTPNMTCPKQAGSCSPEEFSCKNGRCIRSTWRCDGNDDCGDGSDEVGCGCA
PPRIACDGRCYLPHWRCDGDMDCADNSDEKDCGKQNCTENQFQCANGNCIEKRWVCDGDN
DCKDGSDERNCTQSLPKRPVTVNCSGHVFACSNDTNALCIPNSWVCDGERDCLGGEDETE
ERCTNSTCAPYMFRCPSGKCIYMSWVCDGENDCSDVDSSDEKNCTSIGHSKLIPRPTEKP
DFGTKGSCLEWMFKCDNGVCLPYWWRCDGTNDCGDNSDEAACGLRPDNKTHITPEREVKQ
KCAKNQFTCEPGVCIPLTWVCDSVSDCIDGSDESGCDRRHDKGDTGLRCEPAATPCADGS
ACIADHQLCDGVIDCGDHSDEMHCGTVSRRIDNPILIFLFKIICRVY