| New model in OGS2.0 | DPOGS211215 |
|---|---|
| Genomic Position | scaffold81:+ 122919-126527 |
| See gene structure | |
| CDS Length | 2667 |
| Paired RNAseq reads | 695 |
| Single RNAseq reads | 1660 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003195 (2e-30) |
| Best Drosophila hit | lethal (2) 37Cb (0.0) |
| Best Human hit | putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 2 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0003724 RNA helicase activity GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0004004 ATP-dependent RNA helicase activity GO:0005524 ATP binding GO:0003676 nucleic acid binding GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR007502 Helicase-associated domain IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site IPR011709 Domain of unknown function DUF1605 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL10048 |
Nucleotide sequence:
ATGGAAAAACGTAGTAAGCGACATCACACTCCCTCGCCATCGGACTCGGACAGTGCTGAA
GAAACTCGGGCTAAAGATATAAAAGAGCGAGATGAGTTCGCCAAAAGGCTACGAAAGAGA
GATGAAGAAAAAGTTAAGAAAGTTTCTGAAAGTTCCAACAAACGGTCTTATGAAGAAGCA
GCAAAGAGGTTAAAGTTAGAGGCGGAAGACAGAGACAAAATATTACCAAAACTTCGTATT
CAATCCAGAAGAAAATACCTACAGAAAAGAAAAGATGATAAAGTTATTGAACTAGAAGAT
GATATTGCCGATGATGAATATCTTTTTGATGAGAGCATATTGACAGAGAGAGAGAAAAGG
GAAAGGGAACATAAGAAAACTCTGTTACAGTTAGCTAAGGAACATGAAAAAGCTCGGGAA
CTTGAAAATGTTCAAAGATATCACATGCCTCAAGATCTGGGAAAAGGGGAAAAAGGAGAA
TATATTGAAGTTGATGAAAATGAAAAATTGCCAAATTCAGAACAAAGAAAATGGGAACAG
GAACAAATCAAATCTGCCTTTTTTAAATTTGGTGCAAAGGATGCAAAGGCACAAGATGAA
TATGAATTGCTTTTGGACGAACAAATAGATTTCATTCAAGCTCTACAATTAGAAGGCAAC
CAAGAAAAAAAAGATGAGGAAAAGATATCAGAATATAAAAAAGCAAGATTGACCATTGAA
GAGACAAAGAAATCACTACCAGTCTTTCCATTCAGAGATTCTTTGATAGAAGCTATAAAA
AACTACCAAATATTAATTGTGGAAGGTGAAACAGGTTCCGGTAAGACCACTCAAATCCCT
CAATATTTGCATGAGGCTGGATTCACTGATGATGGCAAGAAGATTGGTTGCACTCAACCC
CGAAGAGTAGCAGCAATGTCTGTGGCGGCCAGGGTTGCCCAAGAAATGAATGTTAAATTA
GGCAATGAAGTTGGTTATAGCATTAGATTTGAAGACTGTACCTCAGACAGAACTGTGATT
AAATATATGACTGATGGCACCTTGCACAGAGAATTTCTATCAGAACCGGACTTGGCATCC
TATAGTGTAATGATTATAGATGAAGCTCATGAAAGAACGTTACATACTGACATTCTTTTC
GGTCTCGTAAAAGATATTACTAGATTTCGACCAGATCTTAAGTTATTAATATCCAGCGCT
ACGTTAGACGCCGAAAAGTTTTCTACGTTTTTCGACGATGCGCCGATATTTAGAATCCCC
GGTCGAAGGTTTCCAGTGCATATATATTACACAAAAGCACCAGAAGCCGATTATATCGAT
GCCTGTGTTGTTACAGTTTTACAGATACATGCCACTCAACCGCTTGGCGATATATTAGTG
TTTCTCACTGGACAAGAAGAAATAGAAACTTGCGTCGAAATGTTACAAGAGAGAACTAAG
AAAATAGGAAAGAAATTAAAAGAGCTCATCATTTTACCCGTATATGCAAATCTACCCACT
GACATGCAAGCAAAAATATTTGAACCAACTCCCGAAGGAGCTAGAAAAGTTGTTCTAGCC
ACTAATATCGCGGAGACATCTCTTACGATTGATAACATTATATATGTTATTGATCCAGGA
TTTGCTAAACAAAATAATTTCAATTCCAAAACTGGAATGGAAAGCTTGATGGTGGTACCA
ATATCTAAAGCATCAGCCAATCAAAGGGCTGGCAGGGCTGGGAGGGTAGCTGCTGGTAAA
TGCTTCAGACTGTACACGGCTTGGGCATACAAACATGAACTGGAAGATAATACTGTACCG
GAAATTCAAAGGATAAACTTAGGAAATGCAGTGTTAACATTGAAAGCATTGGGCATTAAC
GATCTGATTCATTTCGATTTTCTAGATCCACCGCCACATGAGACTTTAGTGTTAGCTTTG
GAGCAGTTATATGCTTTAGGAGCCCTAAATCATCATGGCGAATTGACAAAGGCTGGACGG
AGAATGGCAGAATTTCCAACAGATCCAATGTTAGCGAAAATGTTACTTGCTAGTGAAAAG
TACAAATGTTCCGAAGAAATCGTATCAATTGCGGCTATGTTGTCTGTAAATAGCTCTGTA
TTTTATAGACCAAAGGATAAAATAATACATGCCGACACAGCCAGGAAGAATTTTTTCCAC
CGTCATGGAGATCACTTAACCATAATGAACGTTTACAATCAGTGGGCTGACTCAGATTAC
TCCGTCCAATGGTGTTATGAGAATTTCATACAATATAGGTCGATGAAACGTGCTCGCGAC
GTCCGCGAGCAGCTGGTGGGTCTAATGGAAAGGGTTGAAATAGATATGGTATCAAGTATA
TCTGATGACACCAACATCCGCAAAGCCATCACTGCTGGATATTTCTACCATATTGCCAAA
TTCTCTAAAGGTGGCCATTACAAAACAGTAAAACATAACCAAACTGTTATGATACATCCA
AACAGTGCTTTATTTGAAGAGCTACCAAGGTGGGTCATATACCATGAGCTGGTGTTCACT
TCCAAGGAATTTATGCGACAAGTTACAGAAATTGAAAGCAAATGGTTACTAGAAGTGGCG
CCCCATTATTATAAGTCTAAAGAATTAGAGGATTCTACAAATAAAAAAATGCCAAAAACA
ATTGGCAAATCTGCAAATAATTTTTAA
Protein sequence:
MEKRSKRHHTPSPSDSDSAEETRAKDIKERDEFAKRLRKRDEEKVKKVSESSNKRSYEEA
AKRLKLEAEDRDKILPKLRIQSRRKYLQKRKDDKVIELEDDIADDEYLFDESILTEREKR
EREHKKTLLQLAKEHEKARELENVQRYHMPQDLGKGEKGEYIEVDENEKLPNSEQRKWEQ
EQIKSAFFKFGAKDAKAQDEYELLLDEQIDFIQALQLEGNQEKKDEEKISEYKKARLTIE
ETKKSLPVFPFRDSLIEAIKNYQILIVEGETGSGKTTQIPQYLHEAGFTDDGKKIGCTQP
RRVAAMSVAARVAQEMNVKLGNEVGYSIRFEDCTSDRTVIKYMTDGTLHREFLSEPDLAS
YSVMIIDEAHERTLHTDILFGLVKDITRFRPDLKLLISSATLDAEKFSTFFDDAPIFRIP
GRRFPVHIYYTKAPEADYIDACVVTVLQIHATQPLGDILVFLTGQEEIETCVEMLQERTK
KIGKKLKELIILPVYANLPTDMQAKIFEPTPEGARKVVLATNIAETSLTIDNIIYVIDPG
FAKQNNFNSKTGMESLMVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVP
EIQRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKAGR
RMAEFPTDPMLAKMLLASEKYKCSEEIVSIAAMLSVNSSVFYRPKDKIIHADTARKNFFH
RHGDHLTIMNVYNQWADSDYSVQWCYENFIQYRSMKRARDVREQLVGLMERVEIDMVSSI
SDDTNIRKAITAGYFYHIAKFSKGGHYKTVKHNQTVMIHPNSALFEELPRWVIYHELVFT
SKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTIGKSANNF