| New model in OGS2.0 | DPOGS209677 |
|---|---|
| Genomic Position | scaffold38:- 6599-21949 |
| See gene structure | |
| CDS Length | 1800 |
| Paired RNAseq reads | 3714 |
| Single RNAseq reads | 17023 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000516 (7e-172) |
| Best Drosophila hit | IGF-II mRNA-binding protein, isoform I (4e-168) |
| Best Human hit | insulin-like growth factor 2 mRNA-binding protein 1 isoform 1 (3e-84) |
| Best NR hit (blastp) | PREDICTED: similar to igf2 mRNA binding protein, putative [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to igf2 mRNA binding protein, putative [Tribolium castaneum] (2e-177) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0007399 nervous system development GO:0051124 synaptic growth at neuromuscular junction GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0007283 spermatogenesis |
| InterPro families | IPR000504 RNA recognition motif domain IPR004087 K Homology IPR012677 Nucleotide-binding, alpha-beta plait IPR018111 K Homology, type 1, subgroup IPR004088 K Homology, type 1 |
| Orthology group | MCL10974 |
Nucleotide sequence:
ATGTCTAATTCTCTGGAACAACAATTTGGGGACCTTAACTTGTCACAGGAAGATCATGAT
CAAATTTTTGAACAAGAAGATCATCAAGATCAAAGCCGGTCAAGGATTCTCATCAGTGGG
CTATCAATGCACGCTCGCTTCGACACCATCGAGCCACTACTATCACAGTATGGCAACGTG
CAACAATGCGACAAAATCAACTCACGCGATGCCAACACCCAAGCGGTGTACATTACATTC
GAGACCCCGGAGCAGGCGCAGCAAGCCATCAACGGTCTGAACGGATGCGAAGTAGAGGGC
GCGCGTATAAAGGTAGAGGCGGCGGATGGTATGGCGAGGGGTGGACGGCGTGGTCGACCA
GGCGGCGGTCGCGGCGGTGGCGGCGCTCTCGGAGGCGGCTCGCGTCCTACTGATTTTCCT
CTTCGCCTCCTTGTTCAGAGTGACATGGTTGGAGCTATCATAGGCCGTCAGGGAAGCACT
ATCCGCCTCATCACTCAGCAGAGCCGTGCCCGCGTTGACGTTCACCGTAAAGATAACGTT
GGCTCCCTAGAGAAAGCTATCACCATATATGGCAATCCAGATAATTGTACGAATGCCTGC
AAAAGGATACTTGAAGTTATGCAACAGGAAGCTAACAACACTAATAAGGGTGAAATATGC
CTTAAAATATTGGCTCATAATAACTTGATTGGTCGCATAATCGGCAAGGGTGGCAACACA
ATCAAGCGAATAATGCAGGAAACCGATACAAAGATTACTGTATCATCCATAAATGATATA
AACAGTTTTAATTTGGAGCGAATCATAACTGTGAAAGGTACTATTGAGAACATGGCTAAA
GCAGAGTCACAAATTTCGGCCAAACTGCGTCAAAGTTACGAAAACGATCTGCAGGTACTG
GCGCCGCAGAGTATAATGTTCCCTGGGTTACACCCAATGGCAATGATGTCGACGGGGCGC
GGATTTTGTGGTGCGCCGCCTCCTTTCCCACCGCCTATATATGCGCCGCTGGCCGGCCAG
GGCGGCGCGCAACAAGGTGCTGGCGACTCGCAAGAAACGACCTATCTTTATATTCCGAAT
AATGCTGTGGGTGCAATAATTGGCACAAAGGGATCACATATACGCAACATAATTAGATTC
AGCAATGCATCTGTAAAGATTGCTCCTCTTGAGCAAGATAAGGTTATTGAAGGCAGTGTG
GCTGCACAACAGGAGAGGAAAGTGACTATCGTAGGAAGTCCTGAAGCACAGTGGAAGGCG
CAGTATTTGATCTTCGAGAAGATGCGTGAGGAGGGATTCATGTCTGGCTCTGATGATGTG
CGACTGACTGTGGCAATAGTGGTAGCATCGTCGCAGGTGGGCCGCATCATCGGGAAGGGT
GGGCAGAATGTGCGTGAGCTACAGCGCGTCACCGGATCGCTTATTAAGCTTCCCGAGCAG
CCGCAACCGCCGACCGCAGCTGGTAACGACCACGAGACTACTGTACACATCGTCGGCCAC
TTCTACAGTGTTCAGGAATATTACGATTTAAATATTGAGTTATTTGGTTATTTTATAATT
GAGAGCGCGGTCGAGCACACTGTATACGGCGCAGAGAGCGCAGTGCCCGAGGGTCATGTA
TTGAGGAGCTGTTGTTGTTGCTTCTCATCTGAACATATTAAGGTCCAATTTACATTTTAC
AAGGTTAATTTTTTATTCATTGTCTTTATGCTGAACATTCACATATTCCAACAAAATTTT
CTTTCAATTATACTGTTAATTTTAGAACCATTTTATAATTGGTATAAGTTCAGAAACTAA
Protein sequence:
MSNSLEQQFGDLNLSQEDHDQIFEQEDHQDQSRSRILISGLSMHARFDTIEPLLSQYGNV
QQCDKINSRDANTQAVYITFETPEQAQQAINGLNGCEVEGARIKVEAADGMARGGRRGRP
GGGRGGGGALGGGSRPTDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNV
GSLEKAITIYGNPDNCTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNT
IKRIMQETDTKITVSSINDINSFNLERIITVKGTIENMAKAESQISAKLRQSYENDLQVL
APQSIMFPGLHPMAMMSTGRGFCGAPPPFPPPIYAPLAGQGGAQQGAGDSQETTYLYIPN
NAVGAIIGTKGSHIRNIIRFSNASVKIAPLEQDKVIEGSVAAQQERKVTIVGSPEAQWKA
QYLIFEKMREEGFMSGSDDVRLTVAIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLPEQ
PQPPTAAGNDHETTVHIVGHFYSVQEYYDLNIELFGYFIIESAVEHTVYGAESAVPEGHV
LRSCCCCFSSEHIKVQFTFYKVNFLFIVFMLNIHIFQQNFLSIILLILEPFYNWYKFRN