| New model in OGS2.0 | DPOGS216017 |
|---|---|
| Genomic Position | scaffold439:- 193147-201047 |
| See gene structure | |
| CDS Length | 3285 |
| Paired RNAseq reads | 188 |
| Single RNAseq reads | 466 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001085 (0.0) |
| Best Drosophila hit | trpgamma, isoform B (0.0) |
| Best Human hit | short transient receptor potential channel 4 isoform alpha (0.0) |
| Best NR hit (blastp) | transient receptor potential channel [Aedes aegypti] (0.0) |
| Best NR hit (blastx) | transient receptor potential channel [Aedes aegypti] (0.0) |
| GeneOntology terms | GO:0005262 calcium channel activity GO:0005515 protein binding GO:0050908 detection of light stimulus involved in visual perception GO:0006816 calcium ion transport GO:0016028 rhabdomere GO:0005261 cation channel activity GO:0006812 cation transport GO:0009416 response to light stimulus GO:0055085 transmembrane transport GO:0016021 integral to membrane |
| InterPro families | IPR020683 Ankyrin repeat-containing domain IPR002110 Ankyrin repeat IPR004729 Transient receptor potential channel IPR005821 Ion transport IPR013555 Transient receptor potential II IPR002153 Transient receptor potential channel, canonical |
| Orthology group | MCL10107 |
Nucleotide sequence:
ATGACAGAGGAGGAAAATGTAGTGCGGCCTCATCAAGAAATGGCCGTGCTCTCGCTCGAA
GAGAAGAAGTATCTGTTGGGAGTCGAGCGAGGAGATGTGGCAGGAACAAGGCGTGTTTTA
CAACGAGCTCGGGACACGGGACATATTAATGTAGACTGTGTGGACCCTTTGGGCCGCAGT
GCACTTCTCATGGCTATTGACAACGAGAATCTAGAGATGGTTGAGCTGCTTTTGGAGTTT
GGAGTTGAAACAAGGGATGCGTTACTGCACGCCATATCCGAGGAATTCGTTGAGGCGGTC
GAAGCTCTCCTTGACCACGAAGAACGAACACGAAAGCCAGGAGAATTACATAGTTGGGAA
GCTCTTCCTCCGGAGACGGCCACCTTCACGTCGGATATCACACCACTAATTCTGGCCGCA
CACCGTGATAGCTATGAGATCATAAAATTGTTATTGGACCGCGGCGCTGCTCTGCCGGTA
CCTCATGATGTACGTTGTGGTTGCGACGAATGTGTTCGTTCACGTCGCGAGGACTCTCTA
CGGCATTCTCGTTCGCGTATCAACGCATATCGGGCGCTGGCGTCTCCATCATTAATTGCC
CTCTCATCCAAAGATCCAATACTTACGGCTTTTGAACTATCATGGGAGCTCCGTCGGCTG
TCGGCCCTAGAACATGAATTTAAAACCGAATATCAGGAGTTGCGGGTCCAATGTCAAGAG
TTTGCTACAGCGCTATTAGACCACACTCGTACATCTCATGAATTGGAAGTGCTTCTTAAT
CATGAGACGGGATCGCCACAGGCTCCTCTAGCTGAACCTGGCGCTCCGGAAAGAATGCGA
TTATCTCGTCTTAAACTAGCTATAAAATTACGTCAAAAGAAGTTCGTGGCTCATCCTAAT
GTGCAACAACTGCTGGCTTCGATTTGGTACGAGAGCGTGCCAGGTTTTCGTCGCAAAAAC
ATGCTGCTACAAGCAGCTGAAATGGTTCGGATCGGCGTTATGTTTCCACTGTACTCGCTG
GCCTACATCGCCGCTCCTCACTCAACCGCCGGACGCACATTAAGAAAACCTTTTATCAAG
TTCCTGTGTCATTCGGCAAGCTACTTTATGTTTTTATTCCTGCTAATACTCGCCTCGCAG
CGTATTGAGACGGCTGCAGCGGGAATCCTCTGGGGGGAACCAGTACAACACGCAGCGCCC
CTGTCCCGTCGTGGAGCGCCACCTTCTCTCGTCGAATGGCTAATACTGGCCTGGGTCAGC
GGTCTGATATGGAGTGAAGTGAAACAGCTTTGGGACATGGGGCTGCGTGAGTATGTACAC
GACATGTGGAACGTTATCGATTTCGTCACCAATTCCCTTTACGTGGCCACGGTCGCGCTC
CGCATCGTGTCACATTTTCAGGTTCGTAGAGAAATGGGCTTAGGACTGCAATGGAATCAA
CCCCGAGAGAAATGGGACGCATGGGATCCTATGTTGCTCTCTGAAGGCCTTTTCTCGGCT
GCTAATATTTTTAGCAGCTTGAAGCTGGTGTATATCTTCAGTGTGAATCCTCACCTGGGG
CCGCTTCAAGTGTCTCTGAGCCGCATGGTGCTCGATATACTGAAGTTTTTCGTCCTGGAT
ATCCTCGTAATTTTCGCTTTTTCATGTGGTCTCAATCAGTTGCTGTGGTATTATGCTGAC
ATGGAGAAGAAACGTTGTCCCACTGGTTCTCCTGTCGCTACCAACGGTACGCTACCGGAT
CCGGATGCCTGTGTCGTATGGAGACGTTTCGCCAACTTATTTGAGACAATGCAGACGCTA
TTCTGGGCAGCCTTTGGATTGGTGGACTTGGATTCGTTTGAACTAGACGGTATTAAAATA
TTCACGCGTTTCTGGGGAATGCTGATGTTTGGAACCTACGCCGTTATTAATGTCATCGTG
TTGCTTAACTTACTGATCGCTATGATGAATCACTCGTATCAGTTGATTTCGGAACGCGCG
GACGTCGAGTGGAAATTTGCACGTAGTAAACTATGGATCAGTTACTTTGAGGAAGGAGGG
ACGGCGCCGCCACCCTTTAATGTTATCCCGTCACCAAAGTCGGCGCTGTACACGTGGCGC
TGGTTGCAGCGTACCATGTGCGGACACGCGCGCGCTAAACGCGAACACATGAGGACGATA
CGGAGAAAGGCGAAACAAGCGAATGAGCGTGATTTCCGTTATCAGGCAATAATGCGTAAC
TTAGTTCGTCGTTACGTGACAGTCCAACAGCGACGTGCAGAGTGCGGTGGCGTCACTGAA
GATGATGTTAACGAAATCAAACAGGACGTGAGCGCTTTCCGCTGCGAACTGGTTGAAATA
CTGCGGAACTCCGGCATGAACACCTCCACAGCGAACGCTGGCGCACCGGGTGGCGGCGGC
GGTAAAAAGAACCGCCAGAAAGAACGGCGGCTAATGAAAGGTTTTAACATCGCACCGGGC
GGGTCTTTAGCGCCCGTGGACGAGTTCTTGGCGTCACTTCACCATGAACATGGTGGTTCA
CATGGAGCACACCACGCATCGCTATCAGCTCTGCTAGGAGGAAGGCTTAGGACGAGTCAA
TCAAGTCTATCAGATGGCGCAGGGGGCGCGGGCGCCCAACGCCGTAAGCCCTCATCACAT
AAACGACGTTGGGGCACTATTATAGAAGCAGCTCGGGCTGCTCGTGTCTCTCGACTCATT
GGCCGCTCAAGGTCTGAGGACTCCGTATGCGATCATGCTCGTCCTTCACCCAGTGGCAGC
GAACGTTCTGACTCCGGCAGCGACTCACAGCGTAGTCCAGAACGAGGCAGTATACGCAGT
GGCCCGCTACATCCGTTAACAGCACTCGCGGCACTGAAGCGCAAACGCAAGAAATTTTCG
GACTCACGACGAACTGCGGAAGGGGAGCGAACAGTCGCCGGGGTGGCAGAGGCTCTTCAA
CGAGCCAGTTCTGTACCCGCACGACCGCCTCCAATCGCACCACCCCGGGCTCCACGGCCA
CCGCCACCAACAGTGTCACCGTCCACTACCACAGAGAGTGTACAAGCTAAGGGTGGCAGT
CGTGAACCATTGCTGGCTAGTCTCGACGACGATGCGCAAAAAGCATGCGGACAATGCGGC
TACGATGCAACGTCGGAGACTAGTCCAACGGCAGCTGGTGAGCCCGCAGCTGAGGAGGGC
GGTACGGACGGCGCTACTTGTGGGCGGTGTGCGGCCCTCGCTCGCCTGGCCGGAGTGACA
CCACTTCATGGACATGCTCCTCACCACTCAGCTGGCTGGCTCTAG
Protein sequence:
MTEEENVVRPHQEMAVLSLEEKKYLLGVERGDVAGTRRVLQRARDTGHINVDCVDPLGRS
ALLMAIDNENLEMVELLLEFGVETRDALLHAISEEFVEAVEALLDHEERTRKPGELHSWE
ALPPETATFTSDITPLILAAHRDSYEIIKLLLDRGAALPVPHDVRCGCDECVRSRREDSL
RHSRSRINAYRALASPSLIALSSKDPILTAFELSWELRRLSALEHEFKTEYQELRVQCQE
FATALLDHTRTSHELEVLLNHETGSPQAPLAEPGAPERMRLSRLKLAIKLRQKKFVAHPN
VQQLLASIWYESVPGFRRKNMLLQAAEMVRIGVMFPLYSLAYIAAPHSTAGRTLRKPFIK
FLCHSASYFMFLFLLILASQRIETAAAGILWGEPVQHAAPLSRRGAPPSLVEWLILAWVS
GLIWSEVKQLWDMGLREYVHDMWNVIDFVTNSLYVATVALRIVSHFQVRREMGLGLQWNQ
PREKWDAWDPMLLSEGLFSAANIFSSLKLVYIFSVNPHLGPLQVSLSRMVLDILKFFVLD
ILVIFAFSCGLNQLLWYYADMEKKRCPTGSPVATNGTLPDPDACVVWRRFANLFETMQTL
FWAAFGLVDLDSFELDGIKIFTRFWGMLMFGTYAVINVIVLLNLLIAMMNHSYQLISERA
DVEWKFARSKLWISYFEEGGTAPPPFNVIPSPKSALYTWRWLQRTMCGHARAKREHMRTI
RRKAKQANERDFRYQAIMRNLVRRYVTVQQRRAECGGVTEDDVNEIKQDVSAFRCELVEI
LRNSGMNTSTANAGAPGGGGGKKNRQKERRLMKGFNIAPGGSLAPVDEFLASLHHEHGGS
HGAHHASLSALLGGRLRTSQSSLSDGAGGAGAQRRKPSSHKRRWGTIIEAARAARVSRLI
GRSRSEDSVCDHARPSPSGSERSDSGSDSQRSPERGSIRSGPLHPLTALAALKRKRKKFS
DSRRTAEGERTVAGVAEALQRASSVPARPPPIAPPRAPRPPPPTVSPSTTTESVQAKGGS
REPLLASLDDDAQKACGQCGYDATSETSPTAAGEPAAEEGGTDGATCGRCAALARLAGVT
PLHGHAPHHSAGWL