| New model in OGS2.0 | DPOGS213608 |
|---|---|
| Genomic Position | scaffold772:+ 65570-72125 |
| See gene structure | |
| CDS Length | 2781 |
| Paired RNAseq reads | 552 |
| Single RNAseq reads | 1417 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011671 (3e-21) |
| Best Drosophila hit | CG7504, isoform B (3e-14) |
| Best Human hit | probable helicase senataxin (2e-06) |
| Best NR hit (blastp) | PREDICTED: similar to splicing endonuclease positive effector sen1 [Nasonia vitripennis] (1e-35) |
| Best NR hit (blastx) | PREDICTED: similar to splicing endonuclease positive effector sen1 [Nasonia vitripennis] (2e-33) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0005524 ATP binding GO:0003677 DNA binding GO:0005875 microtubule associated complex |
| InterPro families | IPR000253 Forkhead-associated (FHA) domain IPR008984 SMAD/FHA domain |
| Orthology group | ND |
Nucleotide sequence:
ATGTCTAAATGGAAGTTGTGCCGCCAAACTTTCGGAAATGATGAATTTGAATTAAAAGAA
GGTGAAGTAACAATTGGCAGGGGTGTAAATAATACAATAAAACTTTCAAGTATAGTTATA
TCGAGGAACCATTGCTTAATTTGTGTCAAACAAGATGAAGTAGTTATCACCGATTTGAAG
AGCTCCAATGGTGTGTATATAGGAGTAAAAAAAATAGCACCAGAAATCCCATATACTTTA
AGTAATAATGACATTATAGGCCTTGGTTGGGCAATCGGAGCCCCTCTAGGAAATATAAAG
GACAATGAAAAGCATATTTACAAACTAGTCAAAAATGATCCACCTGAAACGAATTTAAAA
CGTAAATTAGATATAAGGGAAACTATTCCCATAGTAAATATTATAGAATATGGGCAAAAC
AGCGAAATCAGTTCAAATGGTAGCAGTTCTGGTGAAATGATAAACAGAACGGAAATTACT
AGTTTTGAAGCAAAAAAAGCAAAACTTGAACCAAATTTCATTGACCTAACTGACGATCAT
AATGAAGATTTTCCACAAGGTTTCATTAGAAATAAACAAGATTATTATATTATTAATGAG
GAACCTGAAATCATACTTAGTGACAGTGATTACGACGCCGAGTATAGGTTTGTCAGATTA
TCAGAAAATTTACAAAAACCTTCTTTAAAAATGGAAAAACCAGACACTTCCATGGAAAAT
TCTACATACAGTCAACAAGATGATGATATCGAAGTGGACTCGGATGAAGTTGAAGAAGTA
AATGAACCTGAACTATCAGATAAAACACCAAATAAAGCATTATTAAAGGACTATACAAAC
AAAGAATGTAACATATTGGACGAAATAAACGAAAATGTTAATGATGACATTGTTATTTAC
AAGAGACCATCCGAAAAGAGTAATTTTCTATCATTCCAACAAACTGATAATAATTTAAAT
ACAGTGAAAAAATCACAAATACAAGAAATCAGTATATGTTGTGGAGACAAAAAAGAATGT
CATGACACAGAAAATATTACACAAACAAGTTCAGAAGAAAAAAGAATCAATGGAAAATCA
TCAAAAATAATTCCTAATACTCAACTACCTGCTCCAATACTAAGTAAAACCAAAGCTAAA
AAAAAATCAAAGGATCAAGTAAAACAGACAAAAACGAAAAAAAATAAATCAAACTCAATG
AAAAAACCAAAACTAACAGATTCTCAAAAAGAGAAAAGGAGACAGAAACTTAAAGAAATA
TGTGAAAAAGAAATTTGTCCCGTGACACACTCTAATGTTGAATCAAAAGTACATGAAAAT
AGTAAAAATAGTATAAGTACAAACAAAACACAGAACCCTAAAGATATCCCTACGCTACAG
GAGATTGAAAAAGTGAATAACAAAATAAAATCTTTTTCTCAGTCAAAAAAACAAATTCAA
ACTATCGAACCTCACGTAATGAAGCCTGGGAAAACAAGAACCGCTCGTAGTAAAGCTAAA
CAAGATACTGAACCCAAAGATAGCACAGATATAAATATGAGCAACGATCCTAAGACACCC
GCAGTGGTACAGAATGAGGATGTCAACAATATTAAAATGGCCAAGCAAAGTCAAAGGCCC
TTACTAGTTCATCCACATATATGCTTGTCACTAAGAAATAAAGTTCTCATAAAGATCCTC
ACATGGAACCCTAATTGGCTTGAGGAACAAAAGAAACAATCCCAACCAGCTCCTATATTA
AAAAATGAAACAGCACTTTTGACGCTATTTTTATCGTTCAACAACTGTGAACAGTATGTC
GGACAAATGAAAAATTTATTACTCATAGAAATATGGGAATATCTTACACAGGAGTACAAT
TATCCAAACAAAAGGCAATATTTAAATCTTCGAATTGAAACTTTACCTCCGAAGCCACCC
AAGGAGAGGTATTCTGAGTTATTTACCATAACTGTTAGAATGCTAATGTCCACGAGCAGT
ATGAAACTGGTGCCCCGGCACGGTGATATAATGATATTGAAATTCAGGGAACACAATGAG
AATAATTCGTATAAATTAAAATTTTGCTTGATTCACAAAGTCGATTATATATCATCTCAC
AATAACAAAACAATTGTTCTATCATGCCACGTCACTTACTCCAGTCTGTTTAAGAGCTTG
CAACCGGGTGATGTGCTGACCGGGGAGAACATAACTAATATAAACAAAGAACTATCACTG
TTTGAAGCGATGAAAGTGCTGGAGAGATCACCTATAAGAGAGTTCATATTGAAACCTGAC
CCGGCACAGTATATTGATATTGATAGGAATGTGTCCACGGGCACAGAGTCACAGTGGACG
ACTGCGTTGAACGACAGCCAGCGGCGAGCTGTGGCGGAGTCTGTCAGCGCCGCTCTTGGT
TCTCAACCAGTATTGAGAATGATACAAGGACCACCGGGGACCGGAAAGTCTAGAGTGATA
TGCTCCATCGTAATGGCGTACTTTTATGGAAATTCAATGAGAAAACAAAGTAAGAGGGGC
AAGATATTGATTTGTGCGACAAGCAACGCGGCCGTCGACGAGCTGGTTATCAGGTTACTG
AACATGAGAGACACTCTAGAGGAAGGTGAACGTTTCCGTCTAGTCCGTGTTGGGCGGCTG
GAGTCCATGCATAAAGACGTCAGAGACGTCAGCACGCAAGCAACGGCTCAGAGGGTACTC
ATGCGGAGAGAGGACTCCAACAGTGACGTCACTAAGGAGGTGAACTGGCAACACATGCAT
ATACACAGATACATTTTCTGA
Protein sequence:
MSKWKLCRQTFGNDEFELKEGEVTIGRGVNNTIKLSSIVISRNHCLICVKQDEVVITDLK
SSNGVYIGVKKIAPEIPYTLSNNDIIGLGWAIGAPLGNIKDNEKHIYKLVKNDPPETNLK
RKLDIRETIPIVNIIEYGQNSEISSNGSSSGEMINRTEITSFEAKKAKLEPNFIDLTDDH
NEDFPQGFIRNKQDYYIINEEPEIILSDSDYDAEYRFVRLSENLQKPSLKMEKPDTSMEN
STYSQQDDDIEVDSDEVEEVNEPELSDKTPNKALLKDYTNKECNILDEINENVNDDIVIY
KRPSEKSNFLSFQQTDNNLNTVKKSQIQEISICCGDKKECHDTENITQTSSEEKRINGKS
SKIIPNTQLPAPILSKTKAKKKSKDQVKQTKTKKNKSNSMKKPKLTDSQKEKRRQKLKEI
CEKEICPVTHSNVESKVHENSKNSISTNKTQNPKDIPTLQEIEKVNNKIKSFSQSKKQIQ
TIEPHVMKPGKTRTARSKAKQDTEPKDSTDINMSNDPKTPAVVQNEDVNNIKMAKQSQRP
LLVHPHICLSLRNKVLIKILTWNPNWLEEQKKQSQPAPILKNETALLTLFLSFNNCEQYV
GQMKNLLLIEIWEYLTQEYNYPNKRQYLNLRIETLPPKPPKERYSELFTITVRMLMSTSS
MKLVPRHGDIMILKFREHNENNSYKLKFCLIHKVDYISSHNNKTIVLSCHVTYSSLFKSL
QPGDVLTGENITNINKELSLFEAMKVLERSPIREFILKPDPAQYIDIDRNVSTGTESQWT
TALNDSQRRAVAESVSAALGSQPVLRMIQGPPGTGKSRVICSIVMAYFYGNSMRKQSKRG
KILICATSNAAVDELVIRLLNMRDTLEEGERFRLVRVGRLESMHKDVRDVSTQATAQRVL
MRREDSNSDVTKEVNWQHMHIHRYIF