| New model in OGS2.0 | DPOGS206786 |
|---|---|
| Genomic Position | scaffold7:+ 288647-302001 |
| See gene structure | |
| CDS Length | 1998 |
| Paired RNAseq reads | 535 |
| Single RNAseq reads | 1505 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013690 (0.0) |
| Best Drosophila hit | resistant to dieldrin, isoform B (2e-158) |
| Best Human hit | gamma-aminobutyric acid receptor subunit beta-1 precursor (2e-70) |
| Best NR hit (blastp) | GABA-gated chloride channel isoform a3 [Heliothis virescens] (0.0) |
| Best NR hit (blastx) | GABA-gated chloride channel isoform a3 [Heliothis virescens] (0.0) |
| GeneOntology terms | GO:0001505 regulation of neurotransmitter levels GO:0006836 neurotransmitter transport GO:0007214 gamma-aminobutyric acid signaling pathway GO:0008503 benzodiazepine receptor activity GO:0030285 integral to synaptic vesicle membrane |
| InterPro families | IPR006201 Neurotransmitter-gated ion-channel IPR006028 Gamma-aminobutyric acid A receptor IPR002289 Gamma-aminobutyric-acid A receptor, beta subunit IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR018000 Neurotransmitter-gated ion-channel, conserved site |
| Orthology group | MCL15933 |
Nucleotide sequence:
ATGATGGACACTTATAAGAAGCAATATAAGATACCAGAGGATATTTGTGCGTCGACCTCC
AGACCGGACATATTTTTATATTCGCGAATTTTAAAGAGCTGTTGTACTAATAGAGCTCAC
GGTTCCTTAGAAAACCAACATCCCCAAAGACCATGCCATCAAGCTCAACAAGTATTATTG
CTCACTAACGAACTCACTAAGAATATGTTCGTTGTAAATTTGTACGCGGTAGAAGTAGGA
GCGAGAGATAGGGGCCTCTTAAACCTACACCTGGGTCGCAAGTCCCAGGCACTGTTGGAG
CTCCCCTCCCTGCAACGCGATGGACCCGGCACCCGCACGGACCAACACGTCTCGGTAACA
CGTCCTTGTGGTTACCTGCAGTGCCTTCACGAGACTAACACACGCGCCATGAGCGGCCGC
TCTAAGAGCGGGCCCATTCTTATAGCTTTCGCGGCCGCATTTCTTCCACAAGCTGAAAAT
GTCGCGGGTGTTGGCGGTGGAGGCATGTTTGGAGATGTCAATATATCAGCTATATTAGAT
TCATTTAGCATAAGTTACGACAAAAGAGTAAGGCCAAACTATGGAGGACCACCCGTGGAA
GTGGGCGTTACCATGTACGTGCTCTCCATCAGCTCTCTGTCTGAAGTCAAAATGGATTTC
ACACTGGATTTTTACTTCAGACAATTTTGGACCGACCCACGTTTGGCCTATAAAAAACGA
CCAGGTGTAGAAACTTTGTCTGTTGGTTCAGAATTTATAAAAAACATTTGGGTACCTGAC
ACATTTTTTGTAAACGAAAAACAATCATATTTTCATATAGCAACCACAAGCAACGAATTT
ATACGCATTCATTATTCGGGATCAATCACAAGAAGTATCAGATTAACTATAACCGCATCA
TGCCCTATGAATCTTCAGTACTTTCCCATGGATAGACAGCTCTGTCACATTGAAATAGAG
AGTTTCGGGTACACCATGAGAGACATTCGGTACCATTGGAAGGACGGACTTATGAGTGTC
GGCATGAGCAACGAGGTGCAGCTGCCGCAATTTCGTGTTCTAGGACACCGGCAGCGTGCT
ACTGTTGTAACTCTCACGACAGTCGGCTACACCATGCGGGACATCCGATACAAATGGAAC
GAAGGACCAAACTCTGTTGGAGTTTCGAGCGAGGTGTCGCTTCCGCAGTTCAAGGTTCTT
GGTCATCGTCAACGAGCTATGGAAATCTCACTGACTACAGGAAATTATTCAAGATTGGCC
TGTGAAATACAATTTGTTCGATCCATGGGATACTACTTGATTCAAATTTATATTCCGTCT
GGTTTAATAGTTATTATATCATGGGTGTCTTTTTGGCTAAACCGAAATGCCACTCCTGCA
CGAGTAGCTCTGGGCGTGACTACTGTGTTGACAATGACTACACTTATGTCTTCAACAAAT
GCTGCACTCCCTAAGATATCATACGTGAAGTCAATTGACGTTTACCTGGGAACTTGTTTT
GTGATGGTCTTCGCCAGTTTATTAGAATATGCAACGGTGGGATATATGGCGAAACGAATA
CAAATGAGAAAGCAAAGATTTGTAGCAATTCAAAAAATTGCATCAGAGAAGAAATTGCCA
GTTGACTGTCCTTCCATAGGAGACCCACATACTCTTTCTAAACTGGGGACTTTGGGAAGA
TGCCCACCGGGTAGACCCTCAGAAGTTCGCTTTAAAGTGCATGATCCTAAAGTTCATTCG
AAAGGCGGAACTTTGGAAAATACTATAAATGGAGGTGGAAGAGGTGCAGAAGAAGATAAC
CCAGGGCCACATTCACACATTCTACACCCAGGGAAGGATATAAGCAAACTTCTCGGTATG
ACGCCATCAGACATAGATAAGTACTCACGTATTGTCTTTCCGGTTTGTTTCGTGTGCTTT
AATCTAATGTACTGGATCATTTATCTACACGTTTCTGACGTCGTGGCTGACGATCTGGTA
CTTCTGGAAGAAGACTAA
Protein sequence:
MMDTYKKQYKIPEDICASTSRPDIFLYSRILKSCCTNRAHGSLENQHPQRPCHQAQQVLL
LTNELTKNMFVVNLYAVEVGARDRGLLNLHLGRKSQALLELPSLQRDGPGTRTDQHVSVT
RPCGYLQCLHETNTRAMSGRSKSGPILIAFAAAFLPQAENVAGVGGGGMFGDVNISAILD
SFSISYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYKKR
PGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHYSGSITRSIRLTITAS
CPMNLQYFPMDRQLCHIEIESFGYTMRDIRYHWKDGLMSVGMSNEVQLPQFRVLGHRQRA
TVVTLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLA
CEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTN
AALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFVAIQKIASEKKLP
VDCPSIGDPHTLSKLGTLGRCPPGRPSEVRFKVHDPKVHSKGGTLENTINGGGRGAEEDN
PGPHSHILHPGKDISKLLGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLV
LLEED