Monarch geneset OGS2.0

DPOGS206786
TranscriptDPOGS206786-TA1494 bp
ProteinDPOGS206786-PA497 aa
Genomic positionDPSCF300001 - 5223711-5231591
RNAseq coverage282x (Rank: top 39%)
Annotation
HeliconiusHMEL0034970.088.07% 
BombyxBGIBMGA013690-TA0.086.81% 
DrosophilaRdl-PC2e-17082.09% 
EBI UniRef50UniRef50_B4PF100.087.44%GE21259 n=17 Tax=Neoptera RepID=B4PF10_DROYA
NCBI RefSeqNP_001093294.10.086.72%GABA-gated chlorine channel alpha subunit [Bombyx mori]
NCBI nr blastpgi|22456810.088.13%GABA-gated chloride channel isoform a3 [Heliothis virescens]
NCBI nr blastxgi|1953747280.078.83%GJ12672 [Drosophila virilis]
Group
Gene OntologyGO:00160219.3e-242integral to membrane
GO:00068119.3e-242ion transport
GO:00160202.3e-55membrane
GO:00068105.8e-55transport
GO:00052305.8e-55extracellular ligand-gated ion channel activity
GO:00052161.6e-09ion channel activity
GO:00048901.6e-09GABA-A receptor activity
KEGG pathway 
InterPro domain[6-497] IPR0062019.3e-242Neurotransmitter-gated ion-channel
[261-490] IPR0060292.3e-55Neurotransmitter-gated ion-channel transmembrane domain
[8-192] IPR0062025.8e-55Neurotransmitter-gated ion-channel ligand-binding
[264-284] IPR0060281e-42Gamma-aminobutyric acid A receptor
[66-80] IPR0022891.6e-09Gamma-aminobutyric-acid A receptor, beta subunit
Orthology groupMCL14544 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS206786-TA
ATGTTTGGAGATGTCAATATATCAGCTATATTAGATTCATTTAGCATAAGTTACGACAAAAGAGTAAGGCCAAACTATGGAGGACCACCCGTGGAAGTGGGCGTTACCATGTACGTGCTCTCCATCAGCTCTCTGTCTGAAGTCAAAATGGATTTCACACTGGATTTTTACTTCAGACAATTTTGGACCGACCCACGTTTGGCCTATAAAAAACGACCAGGTGTAGAAACTTTGTCTGTTGGTTCAGAATTTATAAAAAACATTTGGGTACCTGACACATTTTTTGTAAACGAAAAACAATCATATTTTCATATAGCAACCACAAGCAACGAATTTATACGCATTCATTATTCGGGATCAATCACAAGAAGTATCAGATTAACTATAACCGCATCATGCCCTATGAATCTTCAGTACTTTCCCATGGATAGACAGCTCTGTCACATTGAAATAGAGAGTTTCGGGTACACCATGAGAGACATTCGGTACCATTGGAAGGACGGACTTATGAGTGTCGGCATGAGCAACGAGGTGCAGCTGCCGCAATTTCGTGTTCTAGGACACCGGCAGCGTGCTACTGTTGTAACTCTCACGACAGTCGGCTACACCATGCGGGACATCCGATACAAATGGAACGAAGGACCAAACTCTGTTGGAGTTTCGAGCGAGGTGTCGCTTCCGCAGTTCAAGGTTCTTGGTCATCGTCAACGAGCTATGGAAATCTCACTGACTACAGGAAATTATTCAAGATTGGCCTGTGAAATACAATTTGTTCGATCCATGGGATACTACTTGATTCAAATTTATATTCCGTCTGGTTTAATAGTTATTATATCATGGGTGTCTTTTTGGCTAAACCGAAATGCCACTCCTGCACGAGTAGCTCTGGGCGTGACTACTGTGTTGACAATGACTACACTTATGTCTTCAACAAATGCTGCACTCCCTAAGATATCATACGTGAAGTCAATTGACGTTTACCTGGGAACTTGTTTTGTGATGGTCTTCGCCAGTTTATTAGAATATGCAACGGTGGGATATATGGCGAAACGAATACAAATGAGAAAGCAAAGATTTGTAGCAATTCAAAAAATTGCATCAGAGAAGAAATTGCCAGTTGACTGTCCTTCCATAGGAGACCCACATACTCTTTCTAAACTGGGGACTTTGGGAAGATGCCCACCGGGTAGACCCTCAGAAGTTCGCTTTAAAGTGCATGATCCTAAAGTTCATTCGAAAGGCGGAACTTTGGAAAATACTATAAATGGAGGTGGAAGAGGTGCAGAAGAAGATAACCCAGGGCCACATTCACACATTCTACACCCAGGGAAGGATATAAGCAAACTTCTCGGTATGACGCCATCAGACATAGATAAGTACTCACGTATTGTCTTTCCGGTTTGTTTCGTGTGCTTTAATCTAATGTACTGGATCATTTATCTACACGTTTCTGACGTCGTGGCTGACGATCTGGTACTTCTGGAAGAAGACTAA

Protein sequence:

>DPOGS206786-PA
MFGDVNISAILDSFSISYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYKKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHYSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYHWKDGLMSVGMSNEVQLPQFRVLGHRQRATVVTLTTVGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFVAIQKIASEKKLPVDCPSIGDPHTLSKLGTLGRCPPGRPSEVRFKVHDPKVHSKGGTLENTINGGGRGAEEDNPGPHSHILHPGKDISKLLGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLLEED-