| New model in OGS2.0 | DPOGS215636 |
|---|---|
| Genomic Position | scaffold1549:+ 4755-15515 |
| See gene structure | |
| CDS Length | 858 |
| Paired RNAseq reads | 6 |
| Single RNAseq reads | 21 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007917 (2e-17) |
| Best Drosophila hit | CG34367, isoform C (3e-41) |
| Best Human hit | short stature homeobox protein 2 isoform c (2e-37) |
| Best NR hit (blastp) | PREDICTED: similar to CG34367 CG34367-PC [Tribolium castaneum] (2e-52) |
| Best NR hit (blastx) | PREDICTED: similar to CG34367 CG34367-PC [Acyrthosiphon pisum] (4e-40) |
| GeneOntology terms | GO:0003700 sequence-specific DNA binding transcription factor activity GO:0005634 nucleus GO:0007275 multicellular organismal development GO:0006355 regulation of transcription, DNA-dependent GO:0043565 sequence-specific DNA binding |
| InterPro families | IPR001356 Homeobox IPR000047 Helix-turn-helix motif, lambda-like repressor IPR003654 Paired-like homeodomain protein, OAR IPR009057 Homeodomain-like IPR012287 Homeodomain-related IPR017970 Homeobox, conserved site |
| Orthology group | MCL15679 |
Nucleotide sequence:
ATGGTTATGGAGCGGCTGGCGGACTTCGTCAGCAAGTCTCTGGAGGGAGGAGAGGCCCCG
GCGCCACCTCCAGAGCCCGGGGACCACGAAGACATGGACGAGGAAGTGGATATCACAGCT
CTTGAAGATAAGGCTCCTCCGGCCAAGCGACCGAGAAATTGGCTGGTGTCTCCTCTCCCA
GTACAAAATTACAAAAGAGACGATGATGACGATGATCATAAACACGATATAAATGACAAG
TCGAACGGCAGTATCAGCTCGGGTGGTAAGCAGCGTCGTTCACGGACCAACTTCACCCTG
GAACAGCTGGGAGAGCTGGAGAGGCTGTTCGATGAAACGCATTACCCTGACGCCTTCATG
AGGGAGGAGCTCAGCCAGAGACTAGGGCTCAGCGAGGCCAGGGTGCAGGTGTGGTTTCAA
AATCGACGCGCCAAATGTAGGAAACACGAAAGTCAGATGCACAAAGGTCTGCTGGTAGGT
GGTAGCGGAACTCCCTTGGAGCCATGTCGCGTGGCACCGTACGTGTCCGTGCCACGGCTG
TCGAGCACCACTCAGCGAGCCCCACCACCGCTACCACTCACACCACACCCACCACCTACA
GCTTTCGCACCATTCGACTCCGCTATGCTGTCTGCTGCCGCTCACCAGTATGCTAGTGCG
GCTGCGGCGGCGGCGGCGGCAGCGTTGTGTCCTCCGTATGCTGGTTTAGCGGCTCTGGCG
GCTCGGTGTCGGTCCTCATCTATAGCGGATCTGCGACTGAAGGCTCGCCGGCACGCAGCG
GCGCTTGCAGCTGCGAGGGCTCCCTCGCCCTCGAACTCGCCCGCTCCCGCTCCCGCTTCT
GCTCCCGCTGACACTTAG
Protein sequence:
MVMERLADFVSKSLEGGEAPAPPPEPGDHEDMDEEVDITALEDKAPPAKRPRNWLVSPLP
VQNYKRDDDDDDHKHDINDKSNGSISSGGKQRRSRTNFTLEQLGELERLFDETHYPDAFM
REELSQRLGLSEARVQVWFQNRRAKCRKHESQMHKGLLVGGSGTPLEPCRVAPYVSVPRL
SSTTQRAPPPLPLTPHPPPTAFAPFDSAMLSAAAHQYASAAAAAAAAALCPPYAGLAALA
ARCRSSSIADLRLKARRHAAALAAARAPSPSNSPAPAPASAPADT