| New model in OGS2.0 | DPOGS206925 |
|---|---|
| Genomic Position | scaffold1:- 756680-795693 |
| See gene structure | |
| CDS Length | 2493 |
| Paired RNAseq reads | 562 |
| Single RNAseq reads | 1334 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002870 (7e-10) |
| Best Drosophila hit | CG4078 (5e-44) |
| Best Human hit | Fanconi anemia group J protein (3e-106) |
| Best NR hit (blastp) | FancJ-like protein [Bombyx mori] (2e-180) |
| Best NR hit (blastx) | FancJ-like protein [Bombyx mori] (6e-172) |
| GeneOntology terms | GO:0003677 DNA binding GO:0000077 DNA damage checkpoint GO:0005737 cytoplasm GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0005634 nucleus GO:0004003 ATP-dependent DNA helicase activity GO:0006302 double-strand break repair GO:0004386 helicase activity GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0016787 hydrolase activity GO:0000166 nucleotide binding GO:0005515 protein binding GO:0005524 ATP binding GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
| InterPro families | IPR013020 DNA helicase (DNA repair), Rad3 type IPR010614 DEAD2 IPR014013 Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type IPR006554 Helicase-like, DEXD box c2 type IPR006555 Helicase, ATP-dependent, c2 type |
| Orthology group | MCL18530 |
Nucleotide sequence:
ATGTCTTCTCGAAAAGATAATTTAATGATCAAGAGAACAATTCTCGGTGTTGAAGTAGTA
CTGCCAATAGAGCCATACCGTTGCCAAATGGTTGTTATGTCAAAGGTTATAAAAGCAATA
AATGAGGGTCAGAATTGCCTCTTGGAGAGTCCAACTGGCACCGGCAAAACTCTGGCCTTG
CTATGTTCTTCACTTGCCTGGCAAAAAAGGGAAGAAGAACGCATTAGAAAAGAGAGAGCA
AAAGACGTGTATTTCAGAAATCCTCAATTAAAGGATATTCAGGGCGCTGAGGACTTCATT
TCCAGTGCCCGGAAGGACGTGAACACATGTGAAGTAACATTCACCAGACCTATTCACGGA
CAAAAGAGCATTTACGATACACCAACTGTAGATGTAGAGGACTGTTACGTCACACTTTCC
AAAAAGAGAAAGGAAATTCTAGATGACTCTATAGAATCTGATAGAATAGTTGGAAATGAA
AAGAAATTGAAACTAGATGTATCTGAAGCTGTGGTCGGTGTTGTAACTGAATCACATCGC
GAGAATCAAATAACAGTAACCAAAGGCGTACAAAGTAAAAGTCTTCCCATCATATACTAC
GGCGCCAGAACCCACAAACAGCTGGAACAGGTGGTCCAAGAATTCTCAAAGACCGTGTAC
GCTGAGAACGCATTGATGACTATACTATCGAGCAGAGAGCACAGCTGTATCAAGGACTTT
GATATCAAAAGATGGCCGTCGAAGAACGACATGTGTAGAGGCTGTACCAAGAACCAGAAC
AGCAGCGACAGCGAAACAAGCTGCGTTTACTACGACAATCACAAATTACTCAAGCACAGT
ACATTGCCACGAGCATTCAGTCTCGAGACTTTGCTTTCTGTGGGTAGAAAGAAGAAGGCA
TGCCCGTACTACGCTGCAAGAAAAATGGCTGCAGTAGCTCACATCGTTTTCTGTCCTTAT
AGCTACTTGATTGAACCGGCCATTAGAAAAAGTATGCAAATAAATCTTGAAAACAATGTC
GTCATAATAGACGAGGCTCATAACATAGAGGACATATGCCGTGAGGCAGCCACCTTCACA
TTCACTAAATTACAAATGGAAAATGCTCTTAAGGAGATGAAAGCGGCATCCAGCTTCCGT
TTCGCCAACGACGAGGCCATAGATTACATAACGTACTTACAAACATCTCTAGAAGAATGG
TGTTTATGGTTCGCGAATCAGAAGCCGTTGTTGGACAACCAGCCCAGGAACGGGGCTGCG
TCGGAGTACGCCTGGGACGTTCATCAGTTCGTAGAAACCCTGAACAATCACAGCATAGGC
CAAAAACAATATCCCGAATTCAACAAACACGCTGGAATATTTTGCAAGAAGTTTCGTGAT
GACCCTCGCCTTCTTGTTGGAATCACCCAGAGCACTAACACAATTATAGAAAACTTGGAC
ACAGTCCTCGGTTATTTGTTCCGTAACTCGGGTACGTGCATGGACGACTACAAACCCATT
TTGGTGCGCAAGATAGAGTCATACGACGCCAGCTACAACCACAATTGGAGAAAATCAAAT
TTTGAACAGAAAGTTCTGCCTGAATCGTTATCACTGACGCTGTGCTGTTTGAACCCGGCG
GTGTTGTTCGCGTCGGTGTTGTCGTCCCGCTGCGTCGTCCTCGCCTCCGGGACCCTCACA
CCCATGGCCAGCCTGCACTCTGAGCTCGGCACCCACTTCACACACGCCGTGAGCGCGACC
TATGAAATATCCAAAGATCGGGTGTGGGTGGGGTCACTCAAGTCGGGGACGTCGGGGGAG
AAGATATGTTGCATCAGTAAGTATACGAGCGTCTCAAACGTACAGGACGACTTGGGTGAG
ATGGTGTACGGCGTGTGTGACGTCACGCCTCACGGAGTACTCTGCTTTCTACCCTCCTAC
CGGCTCATGAACCTGCTCGTTAAAAGATGGCGTTACTCGCATTTATGGGAGAGATTGGAG
GCAAAAAAACACGTCTTCGTTGAGAGCACTCACATGAAAACTCACGTAAACATGATGAAG
GCATTCGATAATTGCGTGGGAACAGATCGAGGGGCGCTACTGCTGGCCGTGTACCGCGGG
AAGGTAGCTGAGGGTATGGACTTCAAAGACCACCAGGCTAGAGCTGTTATAGCTATAGGA
ATTCCTTACCCCAGTAAAGACAGGGCTGTCGAAGAAAAAATGAAGTACAACGATAAATAT
TCGAAAAACAGGAATCTGTTAAATGGACGGGAATGGTTGAAAATACAAGCTTATAGGGCG
TTGAATCAGGCTGTGGGCAGGGTTATGCGTCATGTTGGCGACTGGGGCGGAGTCCTACTG
GTGGATTCACGTTACCAAGAGCCGCAGTACAGTGAACATCTCGCACAGTGGGTCAAGGAT
TTATTGGGTAAAAACCACCACGACTTCAACTCGCTGTTCAAAAGCGACGCCGGTTTGAGA
GCGTTCATGGAAAGGAAGAAGAATGAAGAATGA
Protein sequence:
MSSRKDNLMIKRTILGVEVVLPIEPYRCQMVVMSKVIKAINEGQNCLLESPTGTGKTLAL
LCSSLAWQKREEERIRKERAKDVYFRNPQLKDIQGAEDFISSARKDVNTCEVTFTRPIHG
QKSIYDTPTVDVEDCYVTLSKKRKEILDDSIESDRIVGNEKKLKLDVSEAVVGVVTESHR
ENQITVTKGVQSKSLPIIYYGARTHKQLEQVVQEFSKTVYAENALMTILSSREHSCIKDF
DIKRWPSKNDMCRGCTKNQNSSDSETSCVYYDNHKLLKHSTLPRAFSLETLLSVGRKKKA
CPYYAARKMAAVAHIVFCPYSYLIEPAIRKSMQINLENNVVIIDEAHNIEDICREAATFT
FTKLQMENALKEMKAASSFRFANDEAIDYITYLQTSLEEWCLWFANQKPLLDNQPRNGAA
SEYAWDVHQFVETLNNHSIGQKQYPEFNKHAGIFCKKFRDDPRLLVGITQSTNTIIENLD
TVLGYLFRNSGTCMDDYKPILVRKIESYDASYNHNWRKSNFEQKVLPESLSLTLCCLNPA
VLFASVLSSRCVVLASGTLTPMASLHSELGTHFTHAVSATYEISKDRVWVGSLKSGTSGE
KICCISKYTSVSNVQDDLGEMVYGVCDVTPHGVLCFLPSYRLMNLLVKRWRYSHLWERLE
AKKHVFVESTHMKTHVNMMKAFDNCVGTDRGALLLAVYRGKVAEGMDFKDHQARAVIAIG
IPYPSKDRAVEEKMKYNDKYSKNRNLLNGREWLKIQAYRALNQAVGRVMRHVGDWGGVLL
VDSRYQEPQYSEHLAQWVKDLLGKNHHDFNSLFKSDAGLRAFMERKKNEE