| New model in OGS2.0 | DPOGS205725 |
|---|---|
| Genomic Position | scaffold5662:- 2088-13630 |
| See gene structure | |
| CDS Length | 2313 |
| Paired RNAseq reads | 2145 |
| Single RNAseq reads | 5374 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000473 (7e-44) |
| Best Drosophila hit | pacman, isoform B (5e-34) |
| Best Human hit | 5'-3' exoribonuclease 1 isoform b (2e-25) |
| Best NR hit (blastp) | PREDICTED: similar to 5-3 exoribonuclease 1 [Nasonia vitripennis] (5e-48) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC013457 [Tribolium castaneum] (6e-47) |
| GeneOntology terms | GO:0004534 5'-3' exoribonuclease activity GO:0005737 cytoplasm GO:0007369 gastrulation GO:0006401 RNA catabolic process GO:0003676 nucleic acid binding GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0016246 RNA interference GO:0034428 nuclear-transcribed mRNA catabolic process, exonucleolytic, 5'-3' GO:0042060 wound healing GO:0007476 imaginal disc-derived wing morphogenesis GO:0046529 imaginal disc fusion, thorax closure GO:0007391 dorsal closure GO:0000932 cytoplasmic mRNA processing body GO:0007283 spermatogenesis |
| InterPro families | ND |
| Orthology group | MCL25414 |
Nucleotide sequence:
ATGAACCGATCATTTCTCGTAGCGATCATTCTTTATGTTGTTCTCACTGGTAACCTTCGT
CTCCAGACAAACCTGCTATCGGCCATGTCTCCTTGCTACCAGCGACTCACTGAAGAGGAA
TTGAAGAGAAATTCTCACGGACCCATGTTAGTTTACAACTGGACAGCTGACAGTTTAGGG
CCAATAATATCCCCGGAATATTTCCCATCGATAAAAGAAAATCACGCCGTGGAAAAGGCT
GTGTGGCGACACGAGCTCGACGTGCCGCTGCATCTGTTGAAGCGGGGGATGCTGCCCGAC
GCCGACAAGGACGTGCTGTACCCGGGCTTCCCCACCATGCGCCACCTGAAGTACAAGACG
AGTATAAAGAAGTGCAAGGTGAAGGTTTTCGACCAGCCGTCGCGCAATGAGAATATGATG
CTGCAAATTGTACCCACTGCCACAACTGACCCCGCGCTAGAGGAACTGGCCGCCAAGATA
CTGGGCCAGGTCGTGTGGGTCGGCTGGCCGCATTTAACACGGGCCAAAGTACTCTCAATA
TCTAACGAGAAGATCCGCCTTCACTACAATAACCAAAACCCCGAGCTGCCCTACACCACG
GAACACAACACGGGCAACCTGCACCAGCAGTGGATATCGGAGAGGTCTACCATTATAGAG
CACAACATGAATCGTCTCGGCATAGAGTTGGGAGACGTCAAAGTTATAATACACGCTGTC
AATTTACGAGGCTACAAGTACGTTATACAAGACGGAAGCTGCATGGTGATGGAAGATCAG
TGGTGCTCCGTCCCTTGCGGGTACGCCTGGCAGGCGGTCGTCTGCGGGGCGCTCGCCCCC
TCCGCCCCCGTCAAGTACAGGACGCCGTTGGAGGCCTACCCGCCCGGAGATCACGTGTTC
CTCCTCACCATGGGACAGTACTATGGATGTATTGCAACCTGGCGTGCGCAGAGGTTCGGG
TTAGGCAAGAACAAAGTTCAAGATATAGCGGCCTGGTTGAAGTCCCAGCCTCACAGCAGC
GCGCCGAGGCGAGAGTGCGGCTCCGAGGCCTTGGAACCGGAAGAGATGAGGGCTCTCTAC
AACACGCTGGAGACACAGATACGCGACCTCAAGGACAAGGAGAAGAACGTCACGCTGCAC
GTCAAATGGAGCCTGCTTTATAAGTGTGAACTCCACGAGGGGAACATCCAGCCGGATGTC
AAAGCTGACTACCGGATGTACGACCGCGTGGTGTGCGTGGCCAGCAATATAACTGTGCCT
CTGGGGTCAAAGGGCACCATCACCGCCATCTATCAGCCGTCCAACGGAAACACCGTCCGC
CTATCTGACAAGTTGAACGCCTCGCCCAGCTACCAGGTCATGTTTGACGAACCCTTCCCT
GGCGCCATGAAGGAAGATCTGTTCGAGGAGGCCAGGTTCTATAGGATGCAGCCCGCTCAT
ATATTGAATATATCATACGGGCGGAAATTACGCACCGCGAGCGAGCCCCAGGGCTTCGAG
TACAACCAGTCGGCACAACATAACTACACTTGTAACTCACAACCGCCCACCGTACTACGG
AGAGATGACGGACACTACTCTGCCTTCGCCAGCTACAGCCCCCCGCGAGAGATCAAGACA
CCAGTGATTGAACATAAGCCTATCGTTAACAACAACGTTAAAAACGGCCAGACGCCGGAC
AGCGCCACCAACCTGCTGAGAAGTCTGTTGAGGATCAGCGAGGCAGAGGCGGACGGATCC
AGGAGCAATAAGAACGTTCCAGAGACGAACAGCAACTGGCGGTCAAGAAGTGACAAAGCG
ACCTCGCCGAATAAAACAACTCAAAACAACTGGCGAAGAGAGGCAAATACATACAGTCAG
GGAGAGTGGAGCAACACACAGAGACAGAAGCCTATCGGGATGCCATCTATGCCGTACCCG
TGTTTCGGCGCCTCGCCCCCTCGCCCGCACCAGCCCCAAAGCTTCCCCAAACACTTACCG
GACGTCAGCCAAGGAATCAATCTCATGCCGTCCTGGACTAAGAACGAGAACATAAAATCC
GTTCCGCAGCCGGCTCAGCAAACAAACAGACAAGTCAACAACGGGGAGAAGTACAGCAAT
CCATTTGTTCCGCTGCAAGTTCAAACCAGCCGGAGGCGCGTCCAAAACTCGAGTGGTTCA
TCACAGAGACGTGATCTCGAAGGATTACCGACACCGAAGGTCATTCACCCCACACCAAAT
AACACCTTGTTTAATGTTCAGCCGCAGCAGAATCGTCCTCAGAGGAAGAAAAAACCAAGA
ATAGCTGCCAACTTGCCCTTCCAGATGGACTAA
Protein sequence:
MNRSFLVAIILYVVLTGNLRLQTNLLSAMSPCYQRLTEEELKRNSHGPMLVYNWTADSLG
PIISPEYFPSIKENHAVEKAVWRHELDVPLHLLKRGMLPDADKDVLYPGFPTMRHLKYKT
SIKKCKVKVFDQPSRNENMMLQIVPTATTDPALEELAAKILGQVVWVGWPHLTRAKVLSI
SNEKIRLHYNNQNPELPYTTEHNTGNLHQQWISERSTIIEHNMNRLGIELGDVKVIIHAV
NLRGYKYVIQDGSCMVMEDQWCSVPCGYAWQAVVCGALAPSAPVKYRTPLEAYPPGDHVF
LLTMGQYYGCIATWRAQRFGLGKNKVQDIAAWLKSQPHSSAPRRECGSEALEPEEMRALY
NTLETQIRDLKDKEKNVTLHVKWSLLYKCELHEGNIQPDVKADYRMYDRVVCVASNITVP
LGSKGTITAIYQPSNGNTVRLSDKLNASPSYQVMFDEPFPGAMKEDLFEEARFYRMQPAH
ILNISYGRKLRTASEPQGFEYNQSAQHNYTCNSQPPTVLRRDDGHYSAFASYSPPREIKT
PVIEHKPIVNNNVKNGQTPDSATNLLRSLLRISEAEADGSRSNKNVPETNSNWRSRSDKA
TSPNKTTQNNWRREANTYSQGEWSNTQRQKPIGMPSMPYPCFGASPPRPHQPQSFPKHLP
DVSQGINLMPSWTKNENIKSVPQPAQQTNRQVNNGEKYSNPFVPLQVQTSRRRVQNSSGS
SQRRDLEGLPTPKVIHPTPNNTLFNVQPQQNRPQRKKKPRIAANLPFQMD